View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_5 (Length: 437)
Name: NF10970_low_5
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 44351389 - 44350955
Alignment:
| Q |
1 |
ttagatgtcacaagtaaagataaaacaatggagtttacttactt---------------ttatttatttggaatttttcaaaatatatatctcatgaatc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44351389 |
ttagatgtcacaagtaaagataaaacaatggagtttacttacatctaaaatgatgtcatttatttatttggaatttttcaaaatatatatctcatgaatc |
44351290 |
T |
|
| Q |
86 |
cgctcatcatcaaattgatttgctgctcnnnnnnntcaaattggttggttcaaatttgacgtaaaaactacaagtttttgatccaactcaaacaaataaa |
185 |
Q |
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||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44351289 |
cgctcatcatctaattcatttgctgctcaaaaaaatcaaattggttggttcaaatttgacgtaaaaactacaagtttttgaaccaactcaaacaaataaa |
44351190 |
T |
|
| Q |
186 |
atttgattggacaaaataaaggatttgaccaaaactaactcaacttgagaatattcttaattgggctcgtattattattattgggacaaaatttactatt |
285 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
44351189 |
atttgattggacaaaataaaggatttgatcaaaactaactcaacttgagaatatttttaactggactcgtattattattattgggacaaaatttactatt |
44351090 |
T |
|
| Q |
286 |
aacccacggaacatagaagtatgttcaagttnnnnnnngaaatggaatcaacaagggttgattctagatctagtacaattggctaaacttttcaacatga |
385 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |
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| T |
44351089 |
aacccacggaacatagaagtatgttcaagttaaaaaaaggaatgcaatcaacaagggttgattctagatttagtacaattggctaaacttctcaatgtga |
44350990 |
T |
|
| Q |
386 |
tgaattaatgtttgaattctgattgtgagagatat |
420 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44350989 |
ccaattaatgtttgaattctgattgtgagagatat |
44350955 |
T |
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