View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10970_low_6 (Length: 424)
Name: NF10970_low_6
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_6 |
 | |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 41513 - 41907
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41513 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
41612 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41613 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
41712 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
41812 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41813 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
41907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 69216 - 69610
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69216 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
69315 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69316 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
69415 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69416 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
69515 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69516 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
69610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 79762 - 80156
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79762 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
79861 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79862 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
79961 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79962 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
80061 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80062 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
80156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 50761 - 51155
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50761 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
50860 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
50960 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50961 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
51060 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51061 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
51155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 66384 - 66778
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66384 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
66483 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66484 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
66583 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66584 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
66683 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
66684 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcatatggtgccagcggagtcctaaaagcaacatccgctgat |
66778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 32199 - 32593
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32199 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccttctaagaagctggccgtggagggttacctccacatagctatttagcagg |
32298 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32299 |
ctgaggtctcgttcattaacggaattaaccagacaaatcgctccaccaactaagaacggccacgcaccaccacccatagaatcaagaaagagctctcaat |
32398 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32399 |
ctgtcaatccttactatgtctggacctggtaagtttccccttgttgagtcaaattaagccgcaggctccactcctggtggtgcctttccgtcaattcctt |
32498 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32499 |
taagtttcagccttgcgaccatactccccccggaacccaaagacttttatttctcataaggtgccaacggagtcctaaaagcaacatccgctgat |
32593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 60 - 405
Target Start/End: Complemental strand, 4871 - 4526
Alignment:
| Q |
60 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4871 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaactagacaaatcgctccaccaa |
4772 |
T |
|
| Q |
160 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4771 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
4672 |
T |
|
| Q |
260 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4671 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
4572 |
T |
|
| Q |
360 |
tttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4571 |
tttctcatatggtgccagcggagtcctaaaagcaacatccgttgat |
4526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 71872 - 71545
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71872 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
71773 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71772 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
71673 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71672 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
71573 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
71572 |
taagtttcagccttgcgaccatactccc |
71545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 6116 - 6510
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6116 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
6215 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
6315 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
6415 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6416 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
6510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 35544 - 35150
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35544 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
35445 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35444 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
35345 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35344 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
35245 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35244 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
35150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 47668 - 48062
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47668 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
47767 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47768 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
47867 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47868 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
47967 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47968 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
48062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 25286 - 25680
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25286 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
25385 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25386 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
25485 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25486 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
25585 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25586 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
25680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 27148 - 27542
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
27247 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27248 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
27347 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27348 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
27447 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27448 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcatatggtgccagcggagtcctaaaagcaacatccgctgat |
27542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 63866 - 63472
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63866 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccttctaagaagctggccgtggagggttacctccacatagctatttagcagg |
63767 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
63766 |
ctgaggtctcgttcattaacggaattaaccagacaaatcgctccaccaactaagaacggccacgcaccaccacccatagaatcaagaaagagctctcaat |
63667 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
63666 |
ctgtcaatccttactatgtctggacctggtaagtttccccttgttgagtcaaattaagccgcaggctccactcctggtggtgcctttccgtcaattcctt |
63567 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
63566 |
taagtttcagccttgcgaccatactccccccggaacccaaagacttttatttctcataaggtgccaacggagtcctaaaagcaacatccgctgat |
63472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 60 - 405
Target Start/End: Original strand, 79664 - 80009
Alignment:
| Q |
60 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
79664 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaactagacaaatcgctccaccaa |
79763 |
T |
|
| Q |
160 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79764 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
79863 |
T |
|
| Q |
260 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79864 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
79963 |
T |
|
| Q |
360 |
tttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
79964 |
tttctcatatggtgccagcggagtcctaaaagcaacatccgttgat |
80009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 30690 - 30577
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30690 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
30591 |
T |
|
| Q |
111 |
ctgaggtctcgttc |
124 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30590 |
ctgaggtctcgttc |
30577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 42248 - 42351
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42248 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaaaaagctggccgtggagggttacctccacatagctatttagcagg |
42347 |
T |
|
| Q |
111 |
ctga |
114 |
Q |
| |
|
|||| |
|
|
| T |
42348 |
ctga |
42351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 45930 - 46324
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
46029 |
T |
|
| Q |
111 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46030 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
46129 |
T |
|
| Q |
211 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
46229 |
T |
|
| Q |
311 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46230 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgat |
46324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 37967365 - 37967529
Alignment:
| Q |
19 |
tgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37967365 |
tgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggctgtggagggttacctccacatagttatttagcaagctgaggtc |
37967464 |
T |
|
| Q |
119 |
tcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccac |
183 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37967465 |
tcgttcgttaacggaattaaccacacaaatcgctccaccaactaagaacggccatgcactaccac |
37967529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 326
Target Start/End: Original strand, 13643630 - 13643855
Alignment:
| Q |
97 |
agctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaag |
196 |
Q |
| |
|
||||||||| || |||||||||| ||| ||||||| ||| | |||||||||| |||||||||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
13643630 |
agctatttaacaagctgaggtcttgtttgttaacgaaataatccagacaaattgctccaccaactta--acaatcatgcaccaccactaatagaatcaag |
13643727 |
T |
|
| Q |
197 |
aaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgccct |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | ||| || |||||||||| |||||||||||||||| |||| ||||||||||| ||| |||||||| |
|
|
| T |
13643728 |
aaagagctctcagtttgtcaatccttactgtgcc--gacttgataagtttccctgtgttgagtcaaattacgccgtaggctccactcatggaggtgccct |
13643825 |
T |
|
| Q |
297 |
tccgtcaattcctttaagtttcagccttgc |
326 |
Q |
| |
|
||||||||||||| || ||||||||||||| |
|
|
| T |
13643826 |
tccgtcaattcctctatgtttcagccttgc |
13643855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 14380058 - 14379964
Alignment:
| Q |
15 |
gacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14380058 |
gacctgttattgcctcaaacttccgtggtctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcag |
14379964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 7632 - 7550
Alignment:
| Q |
5 |
gagcagcacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
87 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7632 |
gagcatcacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
7550 |
T |
|
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Target: scaffold0306 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 7642 - 7560
Alignment:
| Q |
5 |
gagcagcacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
87 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7642 |
gagcatcacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
7560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 25247 - 25171
Alignment:
| Q |
11 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
87 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25247 |
cacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
25171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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