View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_9 (Length: 401)
Name: NF10970_low_9
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 26126669 - 26127052
Alignment:
| Q |
1 |
attaatgagtaatgaatttggaatatacttatgtttcagttttgagaggaaacgctaaaaggttacaaacctttctgtactaatgctaaaagatctcttg |
100 |
Q |
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| T |
26126669 |
attaatgagtaatgaatttggaatatacttatgtttcagttttgagaggaaacgccaaaaggttacaaacctttctgtactaatgctaaaagatctcttg |
26126768 |
T |
|
| Q |
101 |
aatctttaggagtaaattaggcaatgtggatagaacactgctgtgagtgacattgctcaattattgaagttgatattgttgtgacatcccgcaattattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
26126769 |
aatctttaggagtaaattaggcaatgtggatagaacactgctgtgagtgacattgctcaattattgaagttgatattgctgtgacattgctcaattattt |
26126868 |
T |
|
| Q |
201 |
caacatgtttatttagaatggtccaaacaaatgtcacacatttgtgtggaaaaaactatatcagtaccttagtgacacaaaatctcagacacaaaaggaa |
300 |
Q |
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| T |
26126869 |
caacatgtttatttagaatggtccaaacaaatgtcccacatttgtgtggaaaaaactatatcagtaccttagtgacgcaaaatctcagacacaaaaggaa |
26126968 |
T |
|
| Q |
301 |
atgaaaacagtccttgctttttattcaggaagacttgtgtattttttacctttcggccaactgatatggatatatggtggaatc |
384 |
Q |
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| T |
26126969 |
atgaaaacagtccttgctttttattcaggaagacttgtgtattttttatctttcggccaactgatatggatatatggtggaatc |
26127052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 35093532 - 35093605
Alignment:
| Q |
199 |
ttcaacatgtttatttagaatggtc----caaacaaatgtcacacatttgtgtggaaaaaactatatcagtacc |
268 |
Q |
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| T |
35093532 |
ttcaacatgtttaattagaacggtccaaacaaacaaatctcacacatttgtgagggaaaatccatatcagtacc |
35093605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 45512837 - 45512893
Alignment:
| Q |
15 |
aatttggaatatacttatgtttcagttttgagaggaaacgctaaaaggttacaaacc |
71 |
Q |
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|||| |||||| || |||||||||||||||||||| || || |||| |||||||||| |
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| T |
45512837 |
aattaggaatacacctatgtttcagttttgagagggaatgccaaaatgttacaaacc |
45512893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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