View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10971_low_3 (Length: 293)
Name: NF10971_low_3
Description: NF10971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10971_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 1747227 - 1746978
Alignment:
| Q |
17 |
atttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtattt |
116 |
Q |
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| T |
1747227 |
atttattagcggtgtcggcgtgtaagtgctcggtgtccttgcttcattgattgaaactagtttttttctttgaaaatgccaacttag--------tattt |
1747136 |
T |
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| Q |
117 |
gattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagtt |
216 |
Q |
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| T |
1747135 |
gattattactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagtt |
1747036 |
T |
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| Q |
217 |
ataaattacattgtttttctttgctttcccttgaattgcatcatctggatttgattat |
274 |
Q |
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| T |
1747035 |
ataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgattat |
1746978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 272
Target Start/End: Complemental strand, 6006005 - 6005818
Alignment:
| Q |
84 |
ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa |
183 |
Q |
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| T |
6006005 |
ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa |
6005906 |
T |
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| Q |
184 |
tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgcatcatctggatttgatt |
272 |
Q |
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| T |
6005905 |
tgtaatataacaagttgggtgttatacatcgttttaaattatatag-ttttcttcactttcccttgaattatatcatctggacttgatt |
6005818 |
T |
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