View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10972_low_1 (Length: 728)
Name: NF10972_low_1
Description: NF10972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10972_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Complemental strand, 2690152 - 2689431
Alignment:
| Q |
1 |
aaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatag |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690152 |
aaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatag |
2690053 |
T |
|
| Q |
101 |
accaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690052 |
accaaacatgtccgatattgtttcgatgcttgagagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggac |
2689953 |
T |
|
| Q |
201 |
agagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcacaacggtagaagggagatagaactgatgccctttctgagctattttcgttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689952 |
agagagtgttacaaggatggtgttgatatttcaaatgatcttgcagtcacaacggtagaagggagatagaactgatgccctttctgagctattttcgttt |
2689853 |
T |
|
| Q |
301 |
gcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctatattgataggccgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689852 |
gcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctatattgataggccgc |
2689753 |
T |
|
| Q |
401 |
aagagcacgattatatagtgtaacaaaaatatctttcccacgagcattttgtattgaatatcaatctcttttcactatgataattaagtgtggtaaaaac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2689752 |
aagagcacgattatatagtgtaacaaaaatatctttcccacgagcattttgtattgaatatcaatctcttttcactatgataattaagtgtggtaaaaac |
2689653 |
T |
|
| Q |
501 |
taagttagtgatataataattctactgtattaagtagactataatgtataaactctcattataattataaactatagtcagtc---nnnnnnnnnnnnnt |
597 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
2689652 |
taagctagtgatataataattctactgtattaagtagactataatgtataaactctcattataattataaagtatagtcagtcaaaaaaaaaaaaaaaat |
2689553 |
T |
|
| Q |
598 |
tataaactaatagcaaatgacacttgccaatcat-----tttaatttaatttaatggagttttgctcatgtagtcattggtaaaaggagtatttgctcat |
692 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689552 |
tataaactaatagcaaatgacacttgccaatcattttaatttaatttaatttaatggagttttgctcatgtagtcattggtaaaaggagtatttgctcat |
2689453 |
T |
|
| Q |
693 |
gtagtcaattgtaattgaaatt |
714 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2689452 |
gtagtcaattgtaattgaaatt |
2689431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 45 - 363
Target Start/End: Complemental strand, 2697914 - 2697596
Alignment:
| Q |
45 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| | | ||||||| |||||||||| |
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|
| T |
2697914 |
gctttgagatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaa |
2697815 |
T |
|
| Q |
145 |
caactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgc |
244 |
Q |
| |
|
| ||||||||| ||||||||||||||||| ||||||||| | ||||||| ||| ||||||| ||||| ||||||| ||||| ||||||||||||| | |
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| T |
2697814 |
cgactcttcccatacctacgcagcctttgattacttccatgaggagatctgaggatagagagttttacatggatggtcttgattgttcaaatgatctcac |
2697715 |
T |
|
| Q |
245 |
agtcacaacggtagaagggagatagaactgatgccctttctgagct-----attttcgtttgcatacacacggctcatagttatgttgatttttcctctt |
339 |
Q |
| |
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||| |||| ||||| ||||||||| || | ||| |||||||||| | ||||| |||| ||||| |||||||||| |||||| |||||||||| |
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| T |
2697714 |
agttacaatggtagcagggagataaaattaatgtcctttctgagttgagtcatttttatttg----cacacagctcatagttttgttga-ttttcctctt |
2697620 |
T |
|
| Q |
340 |
tttgcctcttgaattggaagtata |
363 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
2697619 |
tttgcctcttgaattgaaagtata |
2697596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 52 - 482
Target Start/End: Complemental strand, 14519269 - 14518829
Alignment:
| Q |
52 |
gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| | ||||||||| ||| || ||| ||||| |
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|
| T |
14519269 |
gatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccgaaattgtgttgatgcttgagagtaaatcaattactct |
14519170 |
T |
|
| Q |
152 |
tcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcaca |
251 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || ||||||||| | |||| ||| ||||||| |||||||||||| || ||||| |
|
|
| T |
14519169 |
tcccttacctatgcagcctttgattacttccatcaaaagaaacgttaacagagagtctcccaagaatgctgttgatgactcaaatgatctcacaatcaca |
14519070 |
T |
|
| Q |
252 |
acggtagaagggagatag----aactgatgccctttctgagcta------ttttcgtttgcatacacacggctcatagttatgttgatttttcct-cttt |
340 |
Q |
| |
|
| |||||||||||||||| | | ||||| ||||| |||| |||| ||||||||||||| ||||||| || ||||| |||||| | ||| |
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|
| T |
14519069 |
atggtagaagggagatagatttagttaatgccatttctctgctatttttgtttttgtttgcatacaca-tgctcatacttttgttgctttttcatgtttt |
14518971 |
T |
|
| Q |
341 |
ttgcctcttgaattggaagtatagtcttgaaattaaatacattctatattgataggccgcaagagcacgattatatagtgtaacaaaaatatctttccca |
440 |
Q |
| |
|
|||| || |||||| || ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||| |||| | ||| |||| || ||| |
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|
| T |
14518970 |
ttgcttcaagaattgaaaatattatcttggaattaaatacattgtatattgataggtcgcaagtgcacggttatatcgtgtgattaaattatcgtttcca |
14518871 |
T |
|
| Q |
441 |
cgagcattttgtattgaatatcaatctcttttcactatgata |
482 |
Q |
| |
|
|| | ||||| ||||||||||| | |||||||| |||||||| |
|
|
| T |
14518870 |
cggggattttatattgaatatctaactcttttcgctatgata |
14518829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 36291110 - 36291222
Alignment:
| Q |
45 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||| |
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|
| T |
36291110 |
gctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcctcagtggtgttgatgcttgaaagtgaagcaa |
36291209 |
T |
|
| Q |
145 |
caactcttccctt |
157 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36291210 |
caactcttccctt |
36291222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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