View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10972_low_2 (Length: 650)
Name: NF10972_low_2
Description: NF10972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10972_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 35915851 - 35916470
Alignment:
| Q |
8 |
gagaagcagagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgttcaagattgtgtttgtgatgatataactgatgatgatt |
107 |
Q |
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| T |
35915851 |
gagaagccgagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgttcaagattgtgtttgtgatgatataactgatgatgatt |
35915950 |
T |
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| Q |
108 |
tgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagagattgtgtaatacattgcctgcccttgatctttattttgc |
207 |
Q |
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| T |
35915951 |
tgcatgaacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagagattgtgtaatacattgcctgcccttgatctttattttgc |
35916050 |
T |
|
| Q |
208 |
tgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttggggctcgttcttcttcctttggaagccctagaagtgat |
307 |
Q |
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| T |
35916051 |
tgttaatagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttggggctcgttcttcttcctttggaagccctagaagtgat |
35916150 |
T |
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| Q |
308 |
gctgactcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatcannnnnnngccttaatcctttggttctcacgggaataagac |
407 |
Q |
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| T |
35916151 |
gctgactcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatcatttttttgccttaatcctttggttctcacgggaataagac |
35916250 |
T |
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| Q |
408 |
tgcgataattcagaattcggtcaggagttcttaccgatannnnnnnnnnnnncctattttttaacatctcaatgtgtttgtcttatacattattggcaaa |
507 |
Q |
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| T |
35916251 |
tgcgataattcagaattcggtcaggagttcttaccgata----atatatatacctattttttaacatctcaatgtgtttgtcttatacattattggcaaa |
35916346 |
T |
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| Q |
508 |
aaattatacaaattaatagattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctttgtgcaatgtaggggatgatcctgaattggtga |
607 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916347 |
aaattatacaaattaatatattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctttgtgcaatgtaggggatgatcctgaattggtga |
35916446 |
T |
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| Q |
608 |
agaccaagttaagacattgggctc |
631 |
Q |
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| T |
35916447 |
agaccaaattaagacattgggctc |
35916470 |
T |
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