View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10972_low_3 (Length: 503)
Name: NF10972_low_3
Description: NF10972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10972_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Complemental strand, 8137095 - 8136619
Alignment:
| Q |
9 |
agcacagacaggactagggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcaca |
108 |
Q |
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| T |
8137095 |
agcacagacaggactagggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcaca |
8136996 |
T |
|
| Q |
109 |
aattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattg |
208 |
Q |
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| T |
8136995 |
aattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattg |
8136896 |
T |
|
| Q |
209 |
atgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctagattctcataaggatgagagtgttat |
308 |
Q |
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| T |
8136895 |
atgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctaaattctcataaggatgagagtgttat |
8136796 |
T |
|
| Q |
309 |
atatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcattagaagcaacnnnnnnnccttttatttgggttatt |
408 |
Q |
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| T |
8136795 |
atatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcattagaagcaacaaaaaaaccttttatttgggttatt |
8136696 |
T |
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| Q |
409 |
agagagggaaatcagttagaagagttggaaaaatggattgaggagagtggatttgagggaagaatcaatggtagagg |
485 |
Q |
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| T |
8136695 |
agagagggaaatcagttagaagagttggaaaaatggattgaggagagtggatttgagggaagaatcaatgatagagg |
8136619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 51 - 485
Target Start/End: Original strand, 41536627 - 41537064
Alignment:
| Q |
51 |
gaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagacttt |
150 |
Q |
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| T |
41536627 |
gaaacaatttaatgatgacttgcttgaagctgaaataggtagttatgggatgctcgtgaattcttttgaagagttagagccaacatatgcaagggattat |
41536726 |
T |
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| Q |
151 |
aaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagaggtaatagtaacaaa---g |
247 |
Q |
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| T |
41536727 |
aaaaaggtaagaaatgataaagtttggtgtattggtcctgtatcacttagtaacactgattacttggataaggttcaaagaggtaataataataataagg |
41536826 |
T |
|
| Q |
248 |
ttttagttcatgaatggaagcacttgaagtggctagattctcataaggatgagagtgttatatatgcatgccttggaagtttatgtaatttaacatcact |
347 |
Q |
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| T |
41536827 |
tttcaaatgatgaatgggagcacttgaagtggcttgattctcataaacaagggagtgttatctacgcatgctttggcagtttatgcaatttaacaccacc |
41536926 |
T |
|
| Q |
348 |
acagttgatagagctagggttagcattagaagcaacnnnnnnnccttttatttgggttattagagagggaaatcagttagaagagttggaaaaatggatt |
447 |
Q |
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| T |
41536927 |
acagttgatagagcttggtttagcattagaagcaacaaaaagaccctttatttgggttttaagagaaggaaatcagttagaagagttgaaaaaatggctt |
41537026 |
T |
|
| Q |
448 |
gaggagagtggatttgagggaagaatcaatggtagagg |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41537027 |
gaggagagtggatttgagggaagaatcaatggtagagg |
41537064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 76 - 485
Target Start/End: Original strand, 41517676 - 41518085
Alignment:
| Q |
76 |
gaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagttt |
175 |
Q |
| |
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|||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||| ||||||||| || ||||||||| | |||||||||||||||| |
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| T |
41517676 |
gaagctgaaatgggtacttatggtgtaatcatgaattcttttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagttt |
41517775 |
T |
|
| Q |
176 |
ggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaa |
275 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| || |||| | || |||||||| |||| ||||| |
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| T |
41517776 |
ggtgcattggtcctgtatcacttagtaacactgattacttggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaa |
41517875 |
T |
|
| Q |
276 |
gtggctagattctcataaggatgagagtgttatatatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcatta |
375 |
Q |
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| T |
41517876 |
gtggcttgattctcagaaacaagggagtgttctctatgcatgccttggaagtttatgcaatataacaccattacagttgatagaacttggtttagcatta |
41517975 |
T |
|
| Q |
376 |
gaagcaacnnnnnnnccttttatttgggttattagagagggaaatcagttagaagagttggaaaaatggattgaggagagtggatttgagggaagaatca |
475 |
Q |
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|||||||| ||||||||||||||| | ||||| |||||| | |||||||| ||| |||||||||||||||| ||||||||||||| |||||||| |
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| T |
41517976 |
gaagcaacaaaaataccttttatttgggttttaagagaaggaaatgaattagaagaattgaaaaaatggattgaggaaagtggatttgaggaaagaatca |
41518075 |
T |
|
| Q |
476 |
atggtagagg |
485 |
Q |
| |
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|||||||||| |
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|
| T |
41518076 |
atggtagagg |
41518085 |
T |
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