View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10972_low_5 (Length: 240)
Name: NF10972_low_5
Description: NF10972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10972_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 47363270 - 47363466
Alignment:
| Q |
27 |
atagtcagagatgcttttgcttcagccacaaactttggagcttgtggagatgacgaaatgacaaagtctggagtagagaaccaaatgaagttgtccagct |
126 |
Q |
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| T |
47363270 |
atagtcagagatgcttttgcttcagccacaaactttggagcttgtggagatgacgaaataacaaagtctggagtagagaaccaaatgaagttgttcagct |
47363369 |
T |
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| Q |
127 |
agcgcacaaatgatgttcgaggtgcacaacaagtgcagcagccgaatccagtttggcagccaccagtggaagactatgttaaatgtaacgtggatgc |
223 |
Q |
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| T |
47363370 |
agcgcacaaatgatgttcgaggtgcacaacaagtgcagcagccgaatccagtttggcagccaccagtggaagactatgttaaatgtaatgtggatgc |
47363466 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 34711891 - 34711824
Alignment:
| Q |
156 |
caagtgcagcagccgaatccagtttggcagccaccagtggaagactatgttaaatgtaacgtggatgc |
223 |
Q |
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|||||||| |||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||| |
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| T |
34711891 |
caagtgcaacagccggtaccagtttggcaaccaccatcggaagactacgttaaatgtaatgtggatgc |
34711824 |
T |
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