View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_high_10 (Length: 319)
Name: NF10973_high_10
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 34699568 - 34699860
Alignment:
| Q |
1 |
acacaagagctacaaaatttattaaaatcatattcaaacacacacaaacacaatgttaatgcaaaagaaacatcatcccttggtgatgcaaaaatggaaa |
100 |
Q |
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| T |
34699568 |
acacaagagctacaaaatttattaaaatcatattcaaacacacac------aatgttaatgcaaaagaaacatcatcccttggtgatgcaaaaatggaaa |
34699661 |
T |
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| Q |
101 |
tcccaataatggaagtaattcaagtggtcacggtagtttctttgcttacagaaactgtagcacgcgtggaagacgttgtgaaaagtgttgaagaactatc |
200 |
Q |
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| T |
34699662 |
tcccaataatggaagtaattcaagtggtcacggtaatttctttgcttattgaaactgtagcacgtgtggaagacattgtgaaaagtgttgaagaactatc |
34699761 |
T |
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| Q |
201 |
aaaattagctaaattcaaaccagaaatgtcaaagtgtgacaaatctaaacaacgttcaacacaaaataagatcttgccagaccagcatgatgaggaagc |
299 |
Q |
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| T |
34699762 |
aaaattagctaaattcaaaccagaaatgtcaaagtgtgacaaatctaaacaacgttcaacacaaaataagatcttgccagaccagcatgatgaggaagc |
34699860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 34683408 - 34683611
Alignment:
| Q |
81 |
tggtgatgcaaaaatggaaatcccaataatggaagtaattcaagtggtcacggtagtttctttgcttacagaaactgtagcacgcgtggaagacgttgtg |
180 |
Q |
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||||||||||||| | |||||||||||||| ||| |||||||||||||||| || ||||||||||||| |||| |||||| || || |||||| ||||| |
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| T |
34683408 |
tggtgatgcaaaactcgaaatcccaataatagaattaattcaagtggtcacagttgtttctttgcttagtgaaattgtagctcgtgtagaagacattgtg |
34683507 |
T |
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| Q |
181 |
aaaagtgttgaagaactatcaaaattagctaaattcaaaccagaaatgtcaaagtgtgacaaatctaaacaacgttcaacacaaaataagatcttgccag |
280 |
Q |
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||| ||||||||||| ||||| | |||||||| || |||||||||||||| || |||||||| | ||||||| ||||||| | || ||||||| |||| |
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| T |
34683508 |
aaatgtgttgaagaattatcagatttagctaagtttaaaccagaaatgtccaaatgtgacaagaccaaacaacattcaacagacaacaagatctcaccag |
34683607 |
T |
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| Q |
281 |
acca |
284 |
Q |
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|||| |
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| T |
34683608 |
acca |
34683611 |
T |
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