View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10973_high_12 (Length: 280)
Name: NF10973_high_12
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_high_12 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 2327424 - 2327185
Alignment:
| Q |
32 |
caaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga |
131 |
Q |
| |
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|||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327424 |
caaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga |
2327325 |
T |
|
| Q |
132 |
caaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca |
231 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327324 |
caaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca |
2327225 |
T |
|
| Q |
232 |
ttggatcctcccaaacacgaggatccaaccccatctctgc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327224 |
ttggatcctcccaaacacgaggatccaaccccatctctgc |
2327185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2294287 - 2294020
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2294287 |
tcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattc |
2294188 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
2294187 |
caaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctca |
2294088 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |
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|
| T |
2294087 |
tccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgaggatccaacgccatctc |
2294020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2310618 - 2310351
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2310618 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
2310519 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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|
| T |
2310518 |
caaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctca |
2310419 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||| |
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|
| T |
2310418 |
tccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacgatccaacgccatctc |
2310351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2303900 - 2303633
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2303900 |
tcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattc |
2303801 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
|||||||| |||||||||||| | | ||||||||||| || |||||| |||||||||||||||| ||||| |||||||||||||| |||||| ||||| |
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|
| T |
2303800 |
taaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctca |
2303701 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctc |
268 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2303700 |
tccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctc |
2303633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 2351476 - 2351206
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2351476 |
tcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
2351377 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
||| || || ||||||||||||||||| ||||| ||||| ||| || | ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||| |
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|
| T |
2351376 |
caagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttca |
2351277 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgc |
271 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2351276 |
tccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgc |
2351206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2321602 - 2321335
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
||||||||||||||||||| | | |||||| |||||||||||| || ||||| |||| || ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
2321602 |
tcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattc |
2321503 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
2321502 |
caaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctca |
2321403 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
2321402 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctc |
2321335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 2331170 - 2330900
Alignment:
| Q |
1 |
tcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
100 |
Q |
| |
|
|||| |||||||||||||| ||| | || | ||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2331170 |
tcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattc |
2331071 |
T |
|
| Q |
101 |
caaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctca |
200 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
2331070 |
caaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctca |
2330971 |
T |
|
| Q |
201 |
tccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgc |
271 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2330970 |
tccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaaccccatctctgc |
2330900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 41127435 - 41127234
Alignment:
| Q |
48 |
ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag |
147 |
Q |
| |
|
|||||| ||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || || |
|
|
| T |
41127435 |
ccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaa |
41127336 |
T |
|
| Q |
148 |
ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac |
247 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
41127335 |
ctccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaac |
41127236 |
T |
|
| Q |
248 |
ac |
249 |
Q |
| |
|
|| |
|
|
| T |
41127235 |
ac |
41127234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
| Q |
59 |
cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc |
158 |
Q |
| |
|
|||||| || || ||| ||||||||||||| ||||| ||||| |||||||| | || || ||||| | |||||||| || || | |||||||||||| |
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|
| T |
26495009 |
cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc |
26494910 |
T |
|
| Q |
159 |
atcatcttgatctcttt |
175 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
26494909 |
atcatctttatctcttt |
26494893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
| Q |
145 |
cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa |
192 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
55017117 |
cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
55017070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
| Q |
60 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca |
159 |
Q |
| |
|
||||| || |||||| |||| ||||| || ||||| |||||||| || | || |||||| ||| || ||||| ||||| || | |||||||| |||| |
|
|
| T |
15176287 |
ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca |
15176386 |
T |
|
| Q |
160 |
tcatcttgatctctttactccc |
181 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
15176387 |
tcatctttatctctttactccc |
15176408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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