View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_high_4 (Length: 488)
Name: NF10973_high_4
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 38248217 - 38247752
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtctaatcaatcatgattctgccccttaagagggattctatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38248217 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtataatcaatcatgattctgccccttaagagggattctatat |
38248118 |
T |
|
| Q |
101 |
ttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcatatataatcacctctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248117 |
ttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcatatataatcacctctat |
38248018 |
T |
|
| Q |
201 |
ttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaagaagagaatagtatcatatatttgcaatttagtactatcagtgtttcttatac |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248017 |
ttgttcatgtaatagttttcaatcaagggtagaaaatgtttaacaaagaagagaatagcatcatatatttgcaatttagtactatcagtgtttcttatac |
38247918 |
T |
|
| Q |
301 |
ttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctatac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247917 |
ttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctatac |
38247818 |
T |
|
| Q |
401 |
caagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgtt |
468 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38247817 |
caagttatggaaccggaaatgaagcaggaaatgaggcaacct--atattgtaggaatgtccacatgtt |
38247752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 51 - 468
Target Start/End: Complemental strand, 38253199 - 38252783
Alignment:
| Q |
51 |
tggaagggtctaatcaatcatgattctgccccttaagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgta-gtg |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||| | ||| |
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|
| T |
38253199 |
tggaagggtctaatcaataatgattctgcctcttaagagggattccatatttacactcaatatagcaccgacacttgagattaaagatgtgtaacacgtg |
38253100 |
T |
|
| Q |
150 |
tcggacaccgagacaatattgacattttttatcatatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaaga |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||| ||||| |
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| T |
38253099 |
tcggacaccgagacaatattggcattttttatcatatataatcacctctatttgatcatgtaatagttttcgatagagggtaacaaatgtttaataaaga |
38253000 |
T |
|
| Q |
250 |
agagaatagtatcatatatttgcaatttagtactatcagtgtttcttatacttttgatcaagaag-taaccactgtattttttacatttactagttttgt |
348 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||| | ||||| ||| || |||| ||| || ||| || ||||||| |
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|
| T |
38252999 |
agagaatggtgtcatatatttgcaatttagtaccatcgatgtttcttatacatttgacccagaagttaaacattgta-tttgtatattagcttgttttgt |
38252901 |
T |
|
| Q |
349 |
gatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatat |
448 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||| || | || || |
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| T |
38252900 |
gaaatttgtggattatgttttcaggatgggagggttatatgttcttctataccaaattacggaaagggaagtgaagcaggaaatgaatcaggc--tacat |
38252803 |
T |
|
| Q |
449 |
tgtaggaatgtccacatgtt |
468 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
38252802 |
tgtaggaatgtccacatgtt |
38252783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 38213510 - 38213386
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
38213510 |
gttttctgaaatatgtggattatgttttcaggatggaagggttatatgttcttctataccaagttatggaactggaaatgaagcaggaaatgaggcaaac |
38213411 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgtt |
468 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38213410 |
--tatattgtaggaatgtccacatgtt |
38213386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 38237414 - 38237322
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatga |
434 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
38237414 |
gttttgtgaaatttgtggattatgttttcaggatggaagggttatatgttcctctataccaagttatggaaatggaagcgaagcaggaaatga |
38237322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 38242614 - 38242522
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatga |
434 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| |
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|
| T |
38242614 |
gttttgtgaaattgatggattatgttttcaggatgggagggttatatgttcttccaaaccaagttatggaaatggaagcgaagcaggaaatga |
38242522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 468
Target Start/End: Complemental strand, 38219898 - 38219784
Alignment:
| Q |
352 |
atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgt |
451 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| ||||| ||||| ||||||||| || | || ||||| |
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|
| T |
38219898 |
atttatggattatgttttcaggatgagagggttatatgctcttcaataccaagatatggaaatggaaacgaagctggaaatgagacaggc--tacattgt |
38219801 |
T |
|
| Q |
452 |
aggaatgtccacatgtt |
468 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38219800 |
aggaatgtccacatgtt |
38219784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 38225995 - 38225871
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
|||||| || || ||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||| ||||||||||| || |||||| || | |
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|
| T |
38225995 |
gttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctctataccaagttacggaaatggaaatgaagctgggaatgagacaggc |
38225896 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgtt |
468 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
38225895 |
--tacattgtaggaatgtccacatgtt |
38225871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38253370 - 38253323
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaa |
48 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38253370 |
gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaa |
38253323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 38242785 - 38242725
Alignment:
| Q |
183 |
atatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaa |
243 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
38242785 |
atatataatcccttctatttgttcatgtaatagttttcgattgaggttagcaaatgtttaa |
38242725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38243017 - 38242976
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
42 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38243017 |
gaggaaaatgggtgtgttcatgtgaagaggacaagtctccca |
38242976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38214120 - 38214072
Alignment:
| Q |
5 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactgg |
38214072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38226499 - 38226451
Alignment:
| Q |
5 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38226499 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
38226451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 38226122 - 38226069
Alignment:
| Q |
185 |
atataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatg |
238 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||| |||| || |||||| |
|
|
| T |
38226122 |
atataatcacttctatttgatcatgtgatagttttcaattgaggctaacaaatg |
38226069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 438
Target Start/End: Complemental strand, 17453822 - 17453726
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggca |
438 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
17453822 |
gttttgtgaaatttgtggattatgttttcaggatgggagagttatatgttcttctgtaccaagttatggacatggaaatgaagcaggaaatgaggca |
17453726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 17432914 - 17432838
Alignment:
| Q |
352 |
atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcagg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
17432914 |
atttgtggattatgttttcaggatgggagggttatatgttcttctacaccaagttatggcaatggaaatgaggcagg |
17432838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17433520 - 17433468
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
17433520 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
17433468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17454599 - 17454547
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
17454599 |
gagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactgg |
17454547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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