View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10973_low_1 (Length: 828)

Name: NF10973_low_1
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10973_low_1
NF10973_low_1
[»] chr4 (14 HSPs)
chr4 (17-648)||(53472289-53472940)
chr4 (648-813)||(53472093-53472258)
chr4 (647-813)||(9009980-9010146)
chr4 (247-417)||(53469652-53469823)
chr4 (289-420)||(27272572-27272705)
chr4 (247-386)||(32015122-32015262)
chr4 (278-431)||(10395953-10396107)
chr4 (647-764)||(29234732-29234849)
chr4 (275-426)||(50887389-50887540)
chr4 (247-333)||(29235206-29235291)
chr4 (247-332)||(9010892-9010977)
chr4 (294-426)||(21206356-21206491)
chr4 (476-565)||(29234936-29235030)
chr4 (249-417)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (247-444)||(8761138-8761343)
chr2 (247-378)||(37965518-37965651)
chr2 (247-368)||(10128460-10128582)
chr2 (300-444)||(25550091-25550236)
chr2 (372-440)||(37965255-37965323)
chr2 (247-289)||(15140727-15140769)
chr2 (259-336)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (247-444)||(30046377-30046576)
chr3 (275-426)||(25889611-25889763)
chr3 (247-363)||(31141363-31141480)
chr3 (277-314)||(25578999-25579036)
chr3 (651-700)||(30046656-30046705)
[»] chr6 (16 HSPs)
chr6 (692-797)||(22258704-22258809)
chr6 (288-444)||(16910069-16910225)
chr6 (247-417)||(14721668-14721838)
chr6 (278-406)||(13557985-13558114)
chr6 (278-419)||(2921839-2921981)
chr6 (277-421)||(27340600-27340743)
chr6 (277-421)||(27401340-27401483)
chr6 (647-774)||(16909706-16909833)
chr6 (302-426)||(13555994-13556119)
chr6 (275-417)||(11678827-11678966)
chr6 (281-406)||(2923168-2923295)
chr6 (299-405)||(11677133-11677240)
chr6 (258-383)||(22880002-22880128)
chr6 (464-532)||(16909953-16910022)
chr6 (398-444)||(15921056-15921103)
chr6 (258-383)||(22898117-22898243)
[»] chr7 (9 HSPs)
chr7 (278-421)||(7961767-7961911)
chr7 (275-426)||(11269944-11270096)
chr7 (259-442)||(1716602-1716787)
chr7 (259-335)||(1103129-1103205)
chr7 (339-421)||(36207996-36208078)
chr7 (247-309)||(1345068-1345129)
chr7 (248-297)||(1103078-1103127)
chr7 (373-417)||(11269802-11269846)
chr7 (357-411)||(11280342-11280396)
[»] chr1 (6 HSPs)
chr1 (278-406)||(22827037-22827166)
chr1 (278-406)||(22840959-22841088)
chr1 (247-418)||(24284782-24284954)
chr1 (337-417)||(20260944-20261024)
chr1 (247-386)||(24272707-24272846)
chr1 (322-406)||(22826642-22826727)
[»] chr5 (5 HSPs)
chr5 (660-797)||(20289716-20289853)
chr5 (275-410)||(19670657-19670793)
chr5 (275-403)||(32795543-32795672)
chr5 (294-388)||(26896586-26896681)
chr5 (275-351)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (260-384)||(33897182-33897307)
chr8 (325-406)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (247-304)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 648
Target Start/End: Complemental strand, 53472940 - 53472289
Alignment:
Q  17 acataccacccttgttgaactctataaactcttgaaattatggccgaccatatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53472940 acataccacccttgttgaactctataaactcttgaaattatggccgaccatatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccg 53472841  T
Q  117 tgtacactattgttcagttcaaaactcactttataaaaatttaatcggttcaaaacttaactcaagttcgtcacaattttttctacttaaattcgaatgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53472840 tgtacactattgttcagttcaaaactcactttataaaaatttaatcggttcaaaacttaattcaagttcgtcacaattttttctacttaaattcgaatgg 53472741  T
Q  217 tttcttccaagtctaatacactcccaagtattgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagat 316  Q
    |||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||     
T  53472740 tttcttccaagttttatacactccaaagtattgaaatatgccttgaattagtgttgggaaaatgttccacatcggataatacgaagaaatatgcaaaga- 53472642  T
Q  317 tttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaa 416  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  53472641 cttgccatataaataaaagtttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgttacctctactattcagtatctgtaa 53472542  T
Q  417 ttatcgattatagtgaattcttt--------------------tcagtcagtacattgctggataccatcttgtgtcatttttcattctgcctttaacta 496  Q
    |||||||||||||||||||||||                    | ||||||||||||| |||||||||||||||||||||||||||| || |||| ||||    
T  53472541 ttatcgattatagtgaattctttttagtggctctgcttgtggattagtcagtacattgttggataccatcttgtgtcatttttcattttgtcttttacta 53472442  T
Q  497 tattgttattattcttgcgtcttgttataacaaactggtatcagagctggtttgaatctgttcaggcggaaacaatggttgg-ggtaaaagtttgaaaac 595  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  53472441 tatcgttattattcttgcgtcttgttataacaaattggtatcagagctggtttgaatttgttcaggcggaaacaatggttggaggtaaaagtttgaaaac 53472342  T
Q  596 aatggttggaggtaaaagtttgaaagtcgataagatcactgggaggaataatt 648  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  53472341 aatggttggaggtaaaagtttgaaagtcgacaagttcactaggaggaataatt 53472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 648 - 813
Target Start/End: Complemental strand, 53472258 - 53472093
Alignment:
Q  648 tgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgtt 747  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  53472258 tgcttaaacagcaaggtctatgtacacctttgttaaagcctgcaccaaaccctctatctgctgatatcgccactctaaaggagaagacacattctacgtt 53472159  T
Q  748 gctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53472158 gctccttgctttggaagatcatatcatcactaaggttgctgaagaagataccgctgccggtctgtg 53472093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 647 - 813
Target Start/End: Complemental strand, 9010146 - 9009980
Alignment:
Q  647 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 746  Q
    ||||||||||| |||| |||||| |  ||||| ||||| | ||| ||||||||| ||  | |||||||||||||  | ||| ||||| ||||||||||||    
T  9010146 ttgcttaaacaacaagatctatggatgccttttttaaagcttgcgccaaaccctttacctactgatatcgccaccatggaggagaaggcacattctacgt 9010047  T
Q  747 tgctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 813  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||| || |||||||    
T  9010046 tgctccttgttttggaagatcatatcatcactgaggttgttgaagaggatatcgctaccagtctgtg 9009980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 53469823 - 53469652
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 345  Q
    |||||||||| ||| ||||| |||||| ||||||| | ||||| ||||||| ||||||||||||||||| || | ||||||||||||||| |||||| ||    
T  53469823 ttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgtt 53469724  T
Q  346 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    |||||||| || | |||| |||| ||| ||||  |||||| |  ||||||| || |||||||||||||||||    
T  53469723 agtatttcttgaatcaatagttagtggattttactatagccaatgttacctatattattcagtatctgtaat 53469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 27272572 - 27272705
Alignment:
Q  289 cggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg-ttttgttatagct 386  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||| ||||||||| |||| |||| ||||| |||||||    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagct 27272671  T
Q  387 agcgttacctctactattcagtatctgtaattat 420  Q
    ||| |||| |||||||||||  || |||||||||    
T  27272672 agcattacttctactattcaaaatttgtaattat 27272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 32015122 - 32015262
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 345  Q
    |||||||||||||||||||||||||| ||||| ||| |||||   |||||| ||||| ||||||||||| || || | ||||||||| | ||||||| ||    
T  32015122 ttgaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgtt 32015221  T
Q  346 agtatttcatgcaccaatggttaatgggttttgttatagct 386  Q
    |||||||| ||||||||| |||| ||||||||| |||||||    
T  32015222 agtatttcttgcaccaatagttagtgggttttgctatagct 32015262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 431
Target Start/End: Original strand, 10395953 - 10396107
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    ||||| |||||| || || | ||||||||||||||||| |  ||||||||||||||||  |||||| |||||||||| |||| |||| |||| ||||||     
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtta 10396052  T
Q  377 tgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 431  Q
    || ||||| | | ||| | ||||||||||||||||||| ||||||||||||||||    
T  10396053 tgctatagatggtgttccttctactattcagtatctgtgattatcgattatagtg 10396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 647 - 764
Target Start/End: Complemental strand, 29234849 - 29234732
Alignment:
Q  647 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 746  Q
    |||||||||||||| |||||||  |||||||||||||| |||||| |||| ||| ||  ||||||||||| |||||| ||| | ||| |||| |||||||    
T  29234849 ttgcttaaacagcatggtctatagacacctttgttaaagcctgcatcaaatcctctacctgctgatatcgtcactctggaggaaaaggcacaatctacgt 29234750  T
Q  747 tgctccttgctttggaag 764  Q
    ||||||||||||||||||    
T  29234749 tgctccttgctttggaag 29234732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 426
Target Start/End: Complemental strand, 50887540 - 50887389
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    |||||||||| ||||| |||||| ||| ||||||||||||  || |||||||||||||| || |||||  || || || | | ||| ||| |||| ||||    
T  50887540 aaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtggg 50887442  T
Q  374 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 426  Q
    ||||| |||||||||  |||||||||||||| ||||| |||||||||| ||||    
T  50887441 ttttgctatagctagtattacctctactatttagtatatgtaattatcaatta 50887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 29235291 - 29235206
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa 333  Q
    |||||||||  ||||||||| |||||| ||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||    
T  29235291 ttgaaatattccttgaatta-tgttgggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaa 29235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 9010977 - 9010892
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataa 332  Q
    |||||||||| || ||||||||||| | || |||||||||||||||| ||| |||||||||||| | || || |||||||||||||    
T  9010977 ttgaaatatgcctggaattagtgttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa 9010892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 21206356 - 21206491
Alignment:
Q  294 aatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttca-tgcaccaatggttaatggg-ttttgttatagctagcg 390  Q
    ||||||||||||||| |||||  || | ||||||||||||||   ||||||||||||||| | | ||||||| |||| |||| ||||||||||| ||||     
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattttattacaccaatagttagtgggtttttgttatagttagca 21206455  T
Q  391 ttacctctactattcagtatctgtaattatcgatta 426  Q
    |||| |||| ||||||  || |||||||||| ||||    
T  21206456 ttacttctattattcaaaatttgtaattatcaatta 21206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 29235030 - 29234936
Alignment:
Q  476 ttttcattctgcctttaactatat-----tgttattattcttgcgtcttgttataacaaactggtatcagagctggtttgaatctgttcaggcgg 565  Q
    |||||||||||||||| |||||||     ||| |||||||| |||||  ||||||||||||| ||| ||||||||||| | || |||||||||||    
T  29235030 ttttcattctgccttttactatatattattgtcattattctcgcgtcgcgttataacaaactagtaccagagctggttcggatatgttcaggcgg 29234936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 417
Target Start/End: Original strand, 13816904 - 13817073
Alignment:
Q  249 gaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattag 347  Q
    ||||||||  |||||||| |||||| |||| ||| ||||||| | |||| |||||||||||| |||| || | |||||||||||| |  || ||| |||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  348 tatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    |||||| || || ||| |||| || ||||||  ||||||||  || || || ||||||||||| ||||||    
T  13817004 tatttcttgtacaaatagttagtgagttttgcgatagctagtattgccactgctattcagtatttgtaat 13817073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 247 - 444
Target Start/End: Complemental strand, 8761343 - 8761138
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgc-catataaataaaagt-ttgtgtat 344  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||||  ||||||||||||||| |||||| |    
T  8761343 ttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgt 8761244  T
Q  345 tagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgta------attatcgattatagtgaattctt 438  Q
    ||||||||| ||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||      |||||| ||||||||||||||||    
T  8761243 tagtatttcttgcaccaattgttagtggattttgttatagctagcattatctctactattcagtatctgtaatctggattatcaattatagtgaattctt 8761144  T
Q  439 ttcagt 444  Q
    ||||||    
T  8761143 ttcagt 8761138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 37965651 - 37965518
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag--tttgtgtat 344  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |  |||||||||||||  ||||||| |    
T  37965651 ttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgt 37965552  T
Q  345 tagtatttcatgcaccaatggttaatgggttttg 378  Q
    ||||||||| ||||||||| ||||||||||||||    
T  37965551 tagtatttcttgcaccaatagttaatgggttttg 37965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 247 - 368
Target Start/End: Original strand, 10128460 - 10128582
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 345  Q
    |||||||||||| |||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||| || | ||||||||||||||| |||||| ||    
T  10128460 ttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgtt 10128559  T
Q  346 agtatttcatgcaccaatggtta 368  Q
    |||||||| ||||||||| ||||    
T  10128560 agtatttcttgcaccaatagtta 10128582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 444
Target Start/End: Original strand, 25550091 - 25550236
Alignment:
Q  300 aagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctct 398  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| | |||||||| || || ||| |||| ||| ||||  ||||||| | ||||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtgt-agtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  399 actattcagtatctgtaattatcgattatagt-gaattcttttcagt 444  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattcttttcagt 25550236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 37965323 - 37965255
Alignment:
Q  372 ggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattctttt 440  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965323 ggttttgctataggtaacgttacctctactattcagtatctgtaattatcgattatagtgaattctttt 37965255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 15140727 - 15140769
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140727 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 15140769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 15140779 - 15140856
Alignment:
Q  259 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt 336  Q
    ||||||||||||||| |  |||||||||||||| ||| | ||||||||||| |||||||| | |||||||||||||||    
T  15140779 ttgaattagtgttgggattatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaagt 15140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 247 - 444
Target Start/End: Original strand, 30046377 - 30046576
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaa--tatgcaaagattttgccatataaataaaag-tttgtgta 343  Q
    |||||||||| ||||||||| |||||| |||||||| || ||||||||||| ||| |||  |||||||||| ||  ||||||||||||||| |||||||     
T  30046377 ttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtg 30046476  T
Q  344 ttagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattcttttcag 443  Q
    |||||||||| || || ||| |||| | ||||||| ||||||||||||||||||||||||||| ||| || |||||||||||| | ||||||||||||||    
T  30046477 ttagtatttcttgtac-aatagttagtcggttttgctatagctagcgttacctctactattcaatatatgcaattatcgattacattgaattcttttcag 30046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 275 - 426
Target Start/End: Original strand, 25889611 - 25889763
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    ||||||||||||||||||||| | |||||  ||||||||| ||| | ||||||||||||||| |||| | |||||||||| ||||||||| |||| ||||    
T  25889611 aaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtggg 25889710  T
Q  374 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 426  Q
    ||||| ||||||||||  |||||||| |||| ||| | |||||||||| ||||    
T  25889711 ttttgctatagctagcagtacctctattatttagtctttgtaattatcaatta 25889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 31141363 - 31141480
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 345  Q
    |||||||||  ||| || || |||| |||||| ||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||| ||| || ||    
T  31141363 ttgaaatataacttaaaatattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 31141462  T
Q  346 agtatttcatgcaccaat 363  Q
    |||||||| | |||||||    
T  31141463 agtatttcttacaccaat 31141480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 25579036 - 25578999
Alignment:
Q  277 aatgtcccacatcggataatacgaagaaatatgcaaag 314  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  25579036 aatgtctcacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 700
Target Start/End: Original strand, 30046656 - 30046705
Alignment:
Q  651 ttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccct 700  Q
    ||||||| || |||||||| | |||||||||||| |||||||||||||||    
T  30046656 ttaaacaacagggtctatggagacctttgttaaagcctgcaccaaaccct 30046705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 692 - 797
Target Start/End: Original strand, 22258704 - 22258809
Alignment:
Q  692 ccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgctttggaagatcatatcatcactaaggttgctgaag 791  Q
    ||||||||| || ||||||||||||||||||| | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22258704 ccaaaccctctacttgctgatatcgccactctggtggagaagacacattctgcgctgctccttgctttggaagatcatatcatcactaaggttgctgaag 22258803  T
Q  792 aggata 797  Q
    ||||||    
T  22258804 aggata 22258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 288 - 444
Target Start/End: Complemental strand, 16910225 - 16910069
Alignment:
Q  288 tcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagct 386  Q
    |||||||||| |||| |||||||||||| || ||  ||||||||||||| |||||| |||||||||  ||| ||||| |||  || |||||| |||||||    
T  16910225 tcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctatagct 16910126  T
Q  387 agcgttacctctactattcagtatctgtaattatcgattatagtgaattcttttcagt 444  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16910125 agcgt-acatttactattcagtatctgtaattatcgattatagtgaattcttttcagt 16910069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 247 - 417
Target Start/End: Original strand, 14721668 - 14721838
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 345  Q
    |||| ||||| | ||||||| |||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||  |||| |||     
T  14721668 ttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttata 14721766  T
Q  346 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    |||||||| |||| |||| ||||||||||||||||||| ||    |||||| |||||||| |||||||||||    
T  14721767 agtatttcttgcagcaatagttaatgggttttgttatatctgatattacctatactattcggtatctgtaat 14721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 13558114 - 13557985
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    |||||||||||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||||||||||||||| |||| ||| |||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattt 13558015  T
Q  377 tgttatagctagcgttacctctactattca 406  Q
    || ||| |||||| |||| |||||||||||    
T  13558014 tgctattgctagcattacttctactattca 13557985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 2921981 - 2921839
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    ||||| |||||||||||||| |||||||||||||| || || |  |||||||||||||| || ||| |||||||||| ||||||||| |||| |||||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttt 2921882  T
Q  377 tgttatagctagcgttacctctactattcagtatctgtaatta 419  Q
    || |||||||||| |||| |||| ||||||  || ||||||||    
T  2921881 tgctatagctagcattacgtctaatattcaaaatttgtaatta 2921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 27340743 - 27340600
Alignment:
Q  277 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27340743 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27340645  T
Q  377 tgttatagctagcgttacctctactattcagtatctgtaattatc 421  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27340644 tgctataactagcattacttctactattcaaaatttgtaattatc 27340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 27401483 - 27401340
Alignment:
Q  277 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27401483 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27401385  T
Q  377 tgttatagctagcgttacctctactattcagtatctgtaattatc 421  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27401384 tgctataactagcattacttctactattcaaaatttgtaattatc 27401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 647 - 774
Target Start/End: Complemental strand, 16909833 - 16909706
Alignment:
Q  647 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 746  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||   |||||||| |  ||||| |   ||||| |||||||||||     
T  16909833 ttgcttaaacagcagggtctatggacacctttgttaaagcctgcgccaaaccctctaccagctgatattgaaactctggtagagaaggcacattctacga 16909734  T
Q  747 tgctccttgctttggaagatcatatcat 774  Q
    |||||||||||||||||||| |||||||    
T  16909733 tgctccttgctttggaagattatatcat 16909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 13556119 - 13555994
Alignment:
Q  302 gaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctac 400  Q
    |||||||||||||  || | ||||||||||||||  |||||| |||||||||| ||||||||| |||| ||||||||| |||||||||| |||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  401 tattcagtatctgtaattatcgatta 426  Q
    ||||||  || |||||||||| ||||    
T  13556019 tattcaaaatttgtaattatcaatta 13555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 11678827 - 11678966
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    ||||||||||||||||||||||| ||||||||||||||||  || | ||| ||||||||| | |||||| ||||||||||   ||||||    || |||     
T  11678827 aaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtgga 11678922  T
Q  374 ttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    ||||| ||||| |||| |||||||||||||||||||| ||||||    
T  11678923 ttttgctatagttagcattacctctactattcagtatttgtaat 11678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 2923295 - 2923168
Alignment:
Q  281 tcccacatcggataatacgaagaaatatgc-aaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttg 378  Q
    ||||||||||||||||| |||||||||||| ||||  || | ||||||||||||||| |||||| |||||| ||| ||||| ||| |||| ||||| |||    
T  2923295 tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttg 2923196  T
Q  379 ttatagctagcgttacctctactattca 406  Q
    |||||||||   |||| |||||||||||    
T  2923195 ttatagctaatattacttctactattca 2923168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 11677133 - 11677240
Alignment:
Q  299 gaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctc 397  Q
    ||||||||||||||||  ||   ||||||||||||| | |||||| ||||||||||   ||||||| ||||  |||||||  |||||||||| |||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattacctc 11677232  T
Q  398 tactattc 405  Q
    ||||||||    
T  11677233 tactattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 22880128 - 22880002
Alignment:
Q  258 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 356  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||||||| ||| |||||| ||    
T  22880128 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttg 22880029  T
Q  357 caccaatggttaatgggttttgttata 383  Q
    |||||||  ||| ||||||||| ||||    
T  22880028 caccaataattagtgggttttgctata 22880002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 16910022 - 16909953
Alignment:
Q  464 atcttgtgtcatttttcattctgcctttaactat-attgttattattcttgcgtcttgttataacaaact 532  Q
    |||||||||| ||||||||| || |||| ||||| ||||| |||||||| ||||| ||||||||||||||    
T  16910022 atcttgtgtcgtttttcattatgtcttttactattattgtcattattctcgcgtcctgttataacaaact 16909953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 15921103 - 15921056
Alignment:
Q  398 tactattcagtatctgtaattatcgattatagt-gaattcttttcagt 444  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  15921103 tactattcagtatctgtaatcatcgattttagtggaattcttttcagt 15921056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 22898243 - 22898117
Alignment:
Q  258 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 356  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||| ||| ||| |||||| ||    
T  22898243 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttg 22898144  T
Q  357 caccaatggttaatgggttttgttata 383  Q
    |||||||  ||| ||||||||| ||||    
T  22898143 caccaataattagtgggttttgctata 22898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 278 - 421
Target Start/End: Original strand, 7961767 - 7961911
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 7961866  T
Q  377 tgttatagctagcgttacctctactattcagtatctgtaattatc 421  Q
    || |||||||||| |||| |||||||||||  || ||||||||||    
T  7961867 tgctatagctagcattacttctactattcaaaatttgtaattatc 7961911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 275 - 426
Target Start/End: Original strand, 11269944 - 11270096
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    ||||||||||||||||||||||| ||||||||||  |||  ||| | ||||||||||||||  |||||| ||||||||   ||||||||| |||| ||||    
T  11269944 aaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtggg 11270043  T
Q  374 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 426  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||||||| ||||    
T  11270044 ttttgctataactagtgttacctctactattcagtatttgtaattatcaatta 11270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 259 - 442
Target Start/End: Complemental strand, 1716787 - 1716602
Alignment:
Q  259 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgc 357  Q
    ||||| ||||||||||||||  || ||||||| | |||| ||| ||||||| ||||| ||  ||||||||||||| || |||||| ||| |||||| |||    
T  1716787 ttgaaatagtgttggaaaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgc 1716688  T
Q  358 accaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagt-gaattcttttca 442  Q
    | |||| |||| || ||||| |||||||| |  |||||||||||||||||||| | | || |||||||||||| ||||||||||||    
T  1716687 atcaatagttagtgagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtggaattcttttca 1716602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 1103129 - 1103205
Alignment:
Q  259 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag 335  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||    
T  1103129 ttgaattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaag 1103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 36207996 - 36208078
Alignment:
Q  339 gtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatc 421  Q
    |||| |||||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||||    
T  36207996 gtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattatc 36208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 1345068 - 1345129
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatg 309  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||| | |||| |||||||||||    
T  1345068 ttgaaatatgtcttgaattagtgttagaaaaa-gtctcacatcgaagaataagaagaaatatg 1345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 1103078 - 1103127
Alignment:
Q  248 tgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataata 297  Q
    ||||||||| |||||||||||||||| |||||||| |||||| |||||||    
T  1103078 tgaaatatgccttgaattagtgttgggaaaatgtctcacatctgataata 1103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 11269846 - 11269802
Alignment:
Q  373 gttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  11269846 gttttgctatagctagcgttacctctactagttagtatctgtaat 11269802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 11280342 - 11280396
Alignment:
Q  357 caccaatggttaatgggttttgttatagctagcgttacctctactattcagtatc 411  Q
    ||||||| |||| | ||||||| |||||||||||||||||||||||  |||||||    
T  11280342 caccaatagttagtaggttttgctatagctagcgttacctctactagacagtatc 11280396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 22827166 - 22827037
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||  |||||| ||  |||||| ||||||||| |||| |||||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttt 22827067  T
Q  377 tgttatagctagcgttacctctactattca 406  Q
    ||||||||||||| |||| |||||||||||    
T  22827066 tgttatagctagcattacttctactattca 22827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 406
Target Start/End: Original strand, 22840959 - 22841088
Alignment:
Q  278 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 376  Q
    |||||||||||||||||||| ||||||||||||||||  || | |||| |||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 22841058  T
Q  377 tgttatagctagcgttacctctactattca 406  Q
    |  |||||||||| |||| |||||||||||    
T  22841059 tactatagctagcattacttctactattca 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 24284782 - 24284954
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 345  Q
    |||||||||| ||||||||| | |||| |||| |||||||||| || |||| ||| ||||||||||| |||| || ||||||||||| |  |||||| ||    
T  24284782 ttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgtt 24284881  T
Q  346 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaatt 418  Q
    | |||||| ||||||||| || | ||| | ||  ||||||| |  ||| |||||||||| |||||||||||||    
T  24284882 aatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctactatttagtatctgtaatt 24284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 20261024 - 20260944
Alignment:
Q  337 ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 417  Q
    ||||||||||||||||| |||| |||| | |||||  ||||| |||| |||||||||||||||||||||||||| ||||||    
T  20261024 ttgtgtattagtatttcttgcatcaatagctaatgaattttgctataactagcgttacctctactattcagtatatgtaat 20260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 24272707 - 24272846
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 345  Q
    ||||||||||||||||||||||||||||||||  || ||||||| | | || ||||||||||||||||| ||  | ||||| ||||| |  |||||| ||    
T  24272707 ttgaaatatgtcttgaattagtgttggaaaaa-atctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgtt 24272805  T
Q  346 agtatttcatgcaccaatggttaatgggttttgttatagct 386  Q
    |||||||| ||||||||| |||| || |||||  |||||||    
T  24272806 agtatttcttgcaccaatagttagtgagttttactatagct 24272846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 22826727 - 22826642
Alignment:
Q  322 catataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 406  Q
    ||||||||||||||  || ||| |||||||||| ||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||    
T  22826727 catataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattacttctactattca 22826642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 660 - 797
Target Start/End: Complemental strand, 20289853 - 20289716
Alignment:
Q  660 aaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgcttt 759  Q
    |||||||||| ||||||||| |||| ||| | ||| ||||| ||  ||||||| |||||||||||||| ||||  ||||||||| |||||||| ||||||    
T  20289853 aaggtctatggacacctttgataaagcctacgccataccctctacctgctgatttcgccactctagaggagaaagcacattctatgttgctccatgcttt 20289754  T
Q  760 ggaagatcatatcatcactaaggttgctgaagaggata 797  Q
    ||| ||||||||||||||| |||| |||||||||||||    
T  20289753 ggatgatcatatcatcactgaggtcgctgaagaggata 20289716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 275 - 410
Target Start/End: Original strand, 19670657 - 19670793
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    |||||||| |||||  ||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||| | || |||||| |||| ||||    
T  19670657 aaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtggg 19670756  T
Q  374 ttttgttatagctagcgttacctctactattcagtat 410  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19670757 ttttgctatagctagcgttacctctactattcagtat 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 32795672 - 32795543
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 373  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||| || | |||||| | || |||||| |||| ||||    
T  32795672 aaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtggg 32795573  T
Q  374 ttttgttatagctagcgttacctctactat 403  Q
    ||||| |||| ||| |||||||||||||||    
T  32795572 ttttgctataactaacgttacctctactat 32795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 26896586 - 26896681
Alignment:
Q  294 aatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctag 388  Q
    |||| ||||||||||||||||| || |||||||||||||| |  |||||| |||||||||| ||||  ||| ||||||| |||||| |||||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagttaatgtgttttgctatagctag 26896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 32796436 - 32796359
Alignment:
Q  275 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatt 351  Q
    ||||||||||| ||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| ||||||||    
T  32796436 aaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtatt 32796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 33897182 - 33897307
Alignment:
Q  260 tgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgca 358  Q
    |||||||||||||| ||||||||| | |||  |||||| ||||||||||| ||||||||  | |||||||||||||| |||||| |||||||||  | ||    
T  33897182 tgaattagtgttgggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttaca 33897281  T
Q  359 ccaatggttaatgggttttgttatag 384  Q
    |||||  ||| | |||||||||||||    
T  33897282 ccaataattagtaggttttgttatag 33897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 42001905 - 42001987
Alignment:
Q  325 ataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 406  Q
    |||||||||||| |||||| |||||| | | ||||||||| |||| | ||||||| ||||| |||| |||| |||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactattca 42001987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 260530 - 260473
Alignment:
Q  247 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaa 304  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| || ||||||||||||    
T  260530 ttgaaatatgttttgaattagtgttgggaaaatgtcctacatagggtaatacgaagaa 260473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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