View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_10 (Length: 324)
Name: NF10973_low_10
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 42759791 - 42759627
Alignment:
| Q |
18 |
tttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcc |
117 |
Q |
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| T |
42759791 |
tttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttct |
42759692 |
T |
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| Q |
118 |
tcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
182 |
Q |
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| T |
42759691 |
tcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
42759627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 42759505 - 42759433
Alignment:
| Q |
243 |
gactatttctgtttaatt-aagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
314 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759505 |
gactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttccctaagtaattctctg |
42759433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 1402057 - 1402208
Alignment:
| Q |
18 |
tttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcc |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1402057 |
tttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttttactcatctgtttctaaactttct |
1402156 |
T |
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| Q |
118 |
tcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
169 |
Q |
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| T |
1402157 |
tcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 1402329 - 1402400
Alignment:
| Q |
243 |
gactatttctgtttaattaagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1402329 |
gactatatctgtttaattaagtatccagtttcatttcaattccatttatattttgccctaagtaattctctg |
1402400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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