View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10973_low_12 (Length: 299)

Name: NF10973_low_12
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10973_low_12
NF10973_low_12
[»] chr7 (4 HSPs)
chr7 (139-235)||(6557835-6557933)
chr7 (135-227)||(31345420-31345514)
chr7 (135-201)||(4101464-4101530)
chr7 (135-192)||(11472817-11472874)
[»] chr8 (6 HSPs)
chr8 (135-235)||(5793466-5793568)
chr8 (135-203)||(17108291-17108359)
chr8 (135-195)||(29918530-29918590)
chr8 (135-197)||(6388610-6388672)
chr8 (135-204)||(36274957-36275025)
chr8 (135-199)||(17084214-17084278)
[»] chr2 (8 HSPs)
chr2 (135-201)||(13531867-13531933)
chr2 (135-195)||(30696848-30696908)
chr2 (135-194)||(17845497-17845556)
chr2 (135-195)||(25210301-25210361)
chr2 (150-183)||(31600888-31600921)
chr2 (135-227)||(29656840-29656934)
chr2 (135-204)||(34214762-34214830)
chr2 (150-183)||(40359280-40359313)
[»] chr6 (4 HSPs)
chr6 (137-235)||(10925550-10925650)
chr6 (135-183)||(34179113-34179162)
chr6 (152-215)||(34346136-34346201)
chr6 (151-204)||(9402503-9402556)
[»] chr4 (15 HSPs)
chr4 (135-204)||(4741321-4741390)
chr4 (135-214)||(7334291-7334370)
chr4 (135-204)||(25265253-25265321)
chr4 (150-195)||(36919052-36919097)
chr4 (135-194)||(37384203-37384262)
chr4 (135-183)||(12075737-12075785)
chr4 (137-197)||(21714083-21714143)
chr4 (135-183)||(35304623-35304670)
chr4 (147-195)||(39086085-39086133)
chr4 (135-194)||(33516178-33516237)
chr4 (137-183)||(9280997-9281043)
chr4 (135-204)||(12505636-12505705)
chr4 (135-204)||(19549015-19549084)
chr4 (150-183)||(42907828-42907861)
chr4 (135-180)||(50376457-50376502)
[»] chr1 (14 HSPs)
chr1 (135-183)||(2581509-2581556)
chr1 (135-203)||(5283698-5283766)
chr1 (135-199)||(16903435-16903499)
chr1 (135-183)||(23719539-23719587)
chr1 (135-204)||(36421681-36421750)
chr1 (135-175)||(5293515-5293555)
chr1 (137-193)||(8880374-8880430)
chr1 (139-227)||(13692534-13692624)
chr1 (137-204)||(39219173-39219240)
chr1 (137-204)||(42729051-42729118)
chr1 (137-204)||(47644966-47645033)
chr1 (150-180)||(48125803-48125833)
chr1 (135-180)||(43513134-43513179)
chr1 (135-183)||(33293625-33293673)
[»] chr3 (3 HSPs)
chr3 (137-204)||(37032205-37032272)
chr3 (135-183)||(40890282-40890329)
chr3 (135-204)||(772899-772967)
[»] chr5 (8 HSPs)
chr5 (150-227)||(27900522-27900599)
chr5 (135-199)||(12457436-12457500)
chr5 (135-183)||(16311399-16311446)
chr5 (135-183)||(29664906-29664954)
chr5 (135-183)||(35584052-35584099)
chr5 (148-235)||(12709389-12709478)
chr5 (135-183)||(38972857-38972905)
chr5 (135-183)||(39887207-39887255)
[»] scaffold0157 (1 HSPs)
scaffold0157 (135-204)||(14772-14841)
[»] scaffold0244 (1 HSPs)
scaffold0244 (150-215)||(4700-4767)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 6557835 - 6557933
Alignment:
Q  139 tttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttagacgacacttacttctctaagt 235  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||||||  ||||||||| ||| |||||| ||||||||||||    
T  6557835 tttattatccttttcatagaaatagaatctcaaactctaaatcatttcactcacacaatcaaagtctcagtctttcagatgacactcacttctctaagt 6557933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 31345514 - 31345420
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttagacgacacttactt 227  Q
    |||||||| || | ||||||||||||||||||||||||||||| |||||  |||||||||||||||||  |||||| |||||| |||||| ||||    
T  31345514 tcaatttactaccatttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtcatttagatgacactcactt 31345420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 4101530 - 4101464
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaa 201  Q
    ||||||||||| |  |||||| |||||| |||||||||| || ||||||  ||||||||||||||||    
T  4101530 tcaatttattaccaattttatttaaataaaaactcaaacccttaatcatttcactcacacaatcaaa 4101464  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 11472817 - 11472874
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcac 192  Q
    |||||||||||| | ||||||||||||||||||  |||| |||||||||  |||||||    
T  11472817 tcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcac 11472874  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 5793568 - 5793466
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc--agtcttttagacgacacttacttctcta 232  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||||||  ||||||||||| |||||||  |||||||  ||||||||| |||||| ||    
T  5793568 tcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcacacaaccaaagtctaagtctttctgacgacactcacttcttta 5793469  T
Q  233 agt 235  Q
    |||    
T  5793468 agt 5793466  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 17108359 - 17108291
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagt 203  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||| ||  ||||||||||||||||||    
T  17108359 tcaatttattatccattttatataaatagaaacttaaaccctaaataatttcactcacacaatcaaagt 17108291  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 29918590 - 29918530
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacaca 195  Q
    ||||||||||| |  |||||||||||||||||||||||| |||||||||  ||||||||||    
T  29918590 tcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcactcacaca 29918530  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 6388610 - 6388672
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaat 197  Q
    ||||||||||| || ||||||||||| |||||| ||||| |||||||||  ||||||||||||    
T  6388610 tcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcacacaat 6388672  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 36275025 - 36274957
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||||| ||||| |||||||||||||||||| | ||| |||||||||  |||||||||| ||||||||    
T  36275025 tcaatttactatcccttttatataaatagaaac-ccaaccctaaatcatttcactcacacagtcaaagtc 36274957  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 17084214 - 17084278
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatca 199  Q
    |||||||||| ||||||||||||||||| |||| ||| | |||||| ||  | ||||||||||||    
T  17084214 tcaatttattgtcctttttatataaatataaacccaagccctaaattattcccctcacacaatca 17084278  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 13531933 - 13531867
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaa 201  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  13531933 tcaatttattatccattttatataaatagaaactcaaaccctaaatcatttcactcacacaatcaaa 13531867  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 30696908 - 30696848
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacaca 195  Q
    ||||||||||| || ||||||||||||||||| |||||| |||||||||| ||||||||||    
T  30696908 tcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcactcacaca 30696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 17845497 - 17845556
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacac 194  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||  |||||||||    
T  17845497 tcaatttattatcctttttatataaatagaaactccaaacctaaatcatttcactcacac 17845556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 25210361 - 25210301
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacaca 195  Q
    ||||||| ||| || |||||||||||||||||||||||| |||||||||  ||||||||||    
T  25210361 tcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcacaca 25210301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 31600888 - 31600921
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||||||||||||||||||||||||||    
T  31600888 ttttatataaatagaaactcaaactctaaatcat 31600921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 29656840 - 29656934
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttagacgacacttactt 227  Q
    |||||||||||||| ||||||||||||| ||||   ||| |||||||||   ||||||||| ||||||  ||||||||| ||| |||||| ||||    
T  29656840 tcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcacacagtcaaagtctcagtctttcagatgacactgactt 29656934  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 34214762 - 34214830
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||||||||  |||| ||||| ||| ||||    
T  34214762 tcaatttattgccctgtttatataaatagaaactc-aactctaaatcatttcactaacacagtcagagtc 34214830  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 40359313 - 40359280
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||||||||||||||| ||||||||||    
T  40359313 ttttatataaatagaaactcaaagtctaaatcat 40359280  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 10925550 - 10925650
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttagacgacacttacttctctaag 234  Q
    |||||||||| | |||||||||||||||| || |||| |||||||||  |||| ||||||||||||  | ||||||| | |||||||| |||||||||||    
T  10925550 aatttattattccttttatataaatagaatctgaaaccctaaatcatttcactaacacaatcaaagttttagtctttcaaacgacactcacttctctaag 10925649  T
Q  235 t 235  Q
    |    
T  10925650 t 10925650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 34179113 - 34179162
Alignment:
Q  135 tcaatttattatc-ctttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  34179113 tcaatttattacctctttttatataaatagaaactcaaaccctaaatcat 34179162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 34346136 - 34346201
Alignment:
Q  152 ttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttaga 215  Q
    |||||||||||||||| ||||| |||||||||  |||||||||| ||| ||  |||||||||||||    
T  34346136 ttatataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctcagtcttttaga 34346201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 9402556 - 9402503
Alignment:
Q  151 tttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||| ||| ||||    
T  9402556 tttatataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtc 9402503  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 4741321 - 4741390
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| |  | |||||||||||| ||||    
T  4741321 tcaatttattatccattttatataaatagaaactcaaaccctaaatcgttcctctcacacaatcatagtc 4741390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 7334291 - 7334370
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttag 214  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||  |||||||||| | ||||  ||||||||||||    
T  7334291 tcaatttattatcgtttttata--aatagaaactcaaactctaaatcatttcactcacacagttaaagtctcagtcttttag 7334370  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 25265253 - 25265321
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||   ||||||||||||| ||||    
T  25265253 tcaatttattatccttct-atataaatagaaactcaaattctaaatcattttactcacacaatcagagtc 25265321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 36919097 - 36919052
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcatggcactcacaca 195  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  36919097 ttttatataaatagaaactcaaactctaaatcatttcactcacaca 36919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 37384262 - 37384203
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacac 194  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||  |||||||||    
T  37384262 tcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcacac 37384203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 12075737 - 12075785
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||| || ||||||||||||||||||| ||||||| ||||||    
T  12075737 tcaatttattacccattttatataaatagaaactaaaactctgaatcat 12075785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 21714083 - 21714143
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaat 197  Q
    ||||||||| |  |||||||||||||||||||||||| |||||||||  |||| |||||||    
T  21714083 aatttattacctcttttatataaatagaaactcaaaccctaaatcatttcacttacacaat 21714143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 35304623 - 35304670
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  35304623 tcaatttattaccctttt-atataaaaagaaactcaaactctaaatcat 35304670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 39086133 - 39086085
Alignment:
Q  147 cctttttatataaatagaaactcaaactctaaatcatggcactcacaca 195  Q
    |||||||||||||||||||||| |||| |||||||||  ||||||||||    
T  39086133 cctttttatataaatagaaacttaaaccctaaatcatttcactcacaca 39086085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 33516178 - 33516237
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacac 194  Q
    ||||| ||||| || ||||||||||||| |||||||||| |||||||||  |||||||||    
T  33516178 tcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactcacac 33516237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 9280997 - 9281043
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||||||| ||||||||| ||||||| |||||| |||||||||    
T  9280997 aatttattatcccttttatatagatagaaattcaaaccctaaatcat 9281043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 12505636 - 12505705
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||||  || ||||||||||||||||||| ||||  ||||||||  || || |||||||||||||    
T  12505636 tcaatttatttccccttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtc 12505705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 19549015 - 19549084
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||| ||||||| ||||||||||| | ||||||||||  ||||||||  |||| |||| |||||||||    
T  19549015 tcaattcattatccattttatataaacaaaaactcaaaccttaaatcatttcactgacacgatcaaagtc 19549084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 42907861 - 42907828
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||||||||||||||||||| |||||||||    
T  42907861 ttttatataaatagaaactcaaaccctaaatcat 42907828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 50376457 - 50376502
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaat 180  Q
    |||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  50376457 tcaatttattttccattttatataaatagaaactaaaacgctaaat 50376502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 2581556 - 2581509
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  2581556 tcaatttaatatcctttt-atataaatagaaactcaaactctaaatcat 2581509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 5283698 - 5283766
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagt 203  Q
    ||||||||| |||| |||| ||||||||| |||||||||| ||||||||  | ||||||||||||||||    
T  5283698 tcaatttatcatcccttttgtataaataggaactcaaactttaaatcatttctctcacacaatcaaagt 5283766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 16903499 - 16903435
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatca 199  Q
    ||||||||||  |||||||||||||||| |||||||||| |||||| ||  ||||||||||||||    
T  16903499 tcaatttattgccctttttatataaatataaactcaaaccctaaattatttcactcacacaatca 16903435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 23719587 - 23719539
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||    
T  23719587 tcaatttactaccctttttatataaatagaaactcaaactataaatcat 23719539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 36421750 - 36421681
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||||||  || ||||||| ||| ||||    
T  36421750 tcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcattcacacagtcagagtc 36421681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 5293515 - 5293555
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactc 175  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  5293515 tcaatttattatcacttttatataaatagaaactcaaactc 5293555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 8880430 - 8880374
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcaca 193  Q
    ||||||||| || |||| |||||||||||||||||||| ||||||||  ||||||||    
T  8880430 aatttattaccccttttttataaatagaaactcaaactttaaatcatttcactcaca 8880374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 13692624 - 13692534
Alignment:
Q  139 tttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc--agtcttttagacgacacttactt 227  Q
    |||||||||| ||||||||||||||||||  |||| |||||||||  ||| |||||||| | ||||  | ||||| |||||||||| ||||    
T  13692624 tttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccacacaattagagtcttactctttcagacgacactcactt 13692534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 39219240 - 39219173
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||| |  |||||||||||||||||||||||| |||||||||  | |||||||| ||| ||||    
T  39219240 aatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctcacacagtcacagtc 39219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 42729051 - 42729118
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||| |||| ||||||||||||||||||| | || |||||||||  |||||||||| ||| ||||    
T  42729051 aatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcacacagtcagagtc 42729118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 47644966 - 47645033
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    |||||||||||| ||||||||||||||||||||| |  |||||||||  ||||| ||| |||| ||||    
T  47644966 aatttattatcccttttatataaatagaaactcagatcctaaatcatttcactcccacgatcatagtc 47645033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 48125803 - 48125833
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaat 180  Q
    |||||||||||||||||||||||||||||||    
T  48125803 ttttatataaatagaaactcaaactctaaat 48125833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 43513134 - 43513179
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaat 180  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||    
T  43513134 tcaatttataactctttttatataaatagaaactcaaaccctaaat 43513179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 33293625 - 33293673
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||| || || |||||||| ||||||||||||||| |||||||||    
T  33293625 tcaatttagtacccattttatatcaatagaaactcaaaccctaaatcat 33293673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 37032205 - 37032272
Alignment:
Q  137 aatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||| || ||||||||||||| |||||||||| |||||||||  |||||| ||||||| ||||    
T  37032205 aatttattacccattttatataaataaaaactcaaaccctaaatcatttcactcatacaatcagagtc 37032272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 40890329 - 40890282
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||    
T  40890329 tcaatttattatccttct-atataaatagaaactcaaactctagatcat 40890282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 772899 - 772967
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||||| ||||||  |||||||||||||||||||  | ||||||  ||||||||||||| |||||    
T  772899 tcaatttattacccttttg-tataaatagaaactcaaaccttgaatcatttcactcacacaatctaagtc 772967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27900522 - 27900599
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtcagtcttttagacgacacttactt 227  Q
    ||||||||||||||||||| |||| |||||||||  || ||||||| ||| | ||||||||| ||| |||||| ||||    
T  27900522 ttttatataaatagaaactgaaaccctaaatcatttcagtcacacattcagaatcagtctttcagatgacactcactt 27900599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 12457500 - 12457436
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatca 199  Q
    ||||||||||| || ||| ||||||||||||||  ||| ||||||||||  ||||||||||||||    
T  12457500 tcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcacacaatca 12457436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 16311399 - 16311446
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  16311399 tcaatttattatcccttttatataaatagaaac-caaaccctaaatcat 16311446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 29664954 - 29664906
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||| || || |||||| |||||||||||||||||||||||||||    
T  29664954 tcaatttactaccccttttatttaaatagaaactcaaactctaaatcat 29664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 35584099 - 35584052
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  35584099 tcaatttattaccctttt-atataaatagaaactcaaaccctaaatcat 35584052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 12709478 - 12709389
Alignment:
Q  148 ctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaag--tcagtcttttagacgacacttacttctctaagt 235  Q
    ||||||| ||||||||||| |||||| |||||||||  |||||  |||| |||||  ||||||||| | |||||||| |||||| |||||    
T  12709478 ctttttacataaatagaaattcaaaccctaaatcatttcactcgtacaaccaaagtctcagtctttcaaacgacactcacttctttaagt 12709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 38972905 - 38972857
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    ||||||||||| || |||||||||||| |||||| |||| |||||||||    
T  38972905 tcaatttattaacccttttatataaatcgaaactgaaaccctaaatcat 38972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 39887207 - 39887255
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcat 183  Q
    |||||||||| ||  |||||||||||||||||||| || ||||||||||    
T  39887207 tcaatttattctctcttttatataaatagaaactcgaaatctaaatcat 39887255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 14841 - 14772
Alignment:
Q  135 tcaatttattatcctttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtc 204  Q
    ||||||||||  || ||||||||||||||||||| ||||  ||||||||  || || |||||||||||||    
T  14841 tcaatttatttccccttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtc 14772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 4700 - 4767
Alignment:
Q  150 ttttatataaatagaaactcaaactctaaatcatggcactcacacaatcaaagtca--gtcttttaga 215  Q
    |||||||||||||||||   ||||||||||||||  |||||||||| ||| |||||  ||||||||||    
T  4700 ttttatataaatagaaatcaaaactctaaatcatttcactcacacagtcagagtcacggtcttttaga 4767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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