View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_15 (Length: 253)
Name: NF10973_low_15
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43665774 - 43666009
Alignment:
| Q |
1 |
gtctcgtttggttgttcaaataacactactctattattattagtgttacatgc-tgcatgatgcattcctttacaattgcaggttatttagtagctaggg |
99 |
Q |
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| T |
43665774 |
gtctcgtttggttgttcaaataacactactctattattattagtgttacatgcatgcatgatgcattcctttacaattgcaggttatttag----taggg |
43665869 |
T |
|
| Q |
100 |
gggaaattgttcttctatagttttctaattttaaaattacattaactaacnnnnnnnnctaccacatcttgcatatattttaggcaaaattatgtcattg |
199 |
Q |
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| T |
43665870 |
gggaaatggttcttctatagttttctaattttaaaattacattaactaac-aaaaaaactaccacatcttgcatatattttagacaaaattatgtcattg |
43665968 |
T |
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| Q |
200 |
gtcttttaatgttaaattttgtccatttcctttctcccttca |
241 |
Q |
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| T |
43665969 |
gtcttttaatgttaaa-tttgtccatttcctttctcccttca |
43666009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 37726975 - 37726945
Alignment:
| Q |
1 |
gtctcgtttggttgttcaaataacactactc |
31 |
Q |
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| T |
37726975 |
gtctcgtttggttgttcaaataacactactc |
37726945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55195498 - 55195538
Alignment:
| Q |
1 |
gtctcgtttggttgttcaaataacactactctattattatt |
41 |
Q |
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||||| |||| ||||||||||||||||||| |||||||||| |
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| T |
55195498 |
gtctcatttgattgttcaaataacactactttattattatt |
55195538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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