View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10973_low_16 (Length: 250)
Name: NF10973_low_16
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 8545075 - 8544833
Alignment:
| Q |
4 |
cgagagagaagaacttgcttggtttattttatctcaaagtttctcttgctccctgtcgccttcctttaacagtatgctttgctatagatgctaatggttt |
103 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8545075 |
cgagtgagaacaacttgcttggtttattttatctcaaagttcctcttgctccccgtcgccttccttttacagtatgctttgctatagatgctaatggttt |
8544976 |
T |
|
| Q |
104 |
attaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaagattatcaagggaagaaattgagagaatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8544975 |
attaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactattgaaaatggaagattatcaagggaagaaattgagagaatg |
8544876 |
T |
|
| Q |
204 |
atccaggaagctgacaatttcaaggctcaagacatgaagttca |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8544875 |
atccaggaagctgacaatttcaaggctcaagacatgaagttca |
8544833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 8569683 - 8569507
Alignment:
| Q |
74 |
agtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattgga |
173 |
Q |
| |
|
|||||||||| | ||||||||| |||| | || |||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||| | ||| |
|
|
| T |
8569683 |
agtatgctttacaatagatgctgatggaattttgaacgtctctgcagtggaagaaaccagtggcaataaaaatgaaattacaataactaatgagaaggga |
8569584 |
T |
|
| Q |
174 |
agattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcaaaaa |
250 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8569583 |
agattatcaaggggacaaattgagagaatgatccaggaagctgagaatttcaaggctcaagacatgaagttcaaaaa |
8569507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 8590009 - 8589842
Alignment:
| Q |
75 |
gtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaa |
174 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||| ||||| ||||||| |||||||| ||| || | ||||||||||| ||||||| ||||| |
|
|
| T |
8590009 |
gtatgcttttctatagatgctgatggtatattaaacgtgtctgctgaggaagaaagcagtggtaataaaaaaaatattacaataaccaatgaaaatggaa |
8589910 |
T |
|
| Q |
175 |
gattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaag |
242 |
Q |
| |
|
|| | |||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8589909 |
gactgacaagcgaagaaattgagagaatgatccaggaagctgagcacttcaaggctgaagacatgaag |
8589842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 7878530 - 7878699
Alignment:
| Q |
75 |
gtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaa |
174 |
Q |
| |
|
||||| |||| |||||||||| ||||| ||||||| ||||| |||| |||||||| ||||||| ||||| ||||||||||| || ||||||| ||||| |
|
|
| T |
7878530 |
gtatgttttgatatagatgctgatggtatattaaatgtctccgcaaaggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaa |
7878629 |
T |
|
| Q |
175 |
gattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagtt |
244 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| | |||||||| | |||||| || ||||||||||||| |
|
|
| T |
7878630 |
gactatcaagggaagaaattgagagaaagattaaagaagctgagtacttcaagtctgaagacatgaagtt |
7878699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 8609354 - 8609137
Alignment:
| Q |
9 |
gagaagaacttgcttggtttattttatctcaaagtttctcttgctccctgtcgccttcctttaacagtatgctttgctatagatgctaatggtttattaa |
108 |
Q |
| |
|
||||| || ||||||||||||||| | |||||||| ||||||| || || | |||||| | |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
8609354 |
gagaacaatttgcttggtttatttgaactcaaagtacctcttgcgcctcgtggacttcctatccaagtatgctttgctatagatgctgatggtatattaa |
8609255 |
T |
|
| Q |
109 |
acgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaagattatcaagggaagaaattgagagaatgatcca |
208 |
Q |
| |
|
| ||||||||| |||||||||||||||| |||||| || ||||| ||||| || |||| ||| || | |||| |||||||||||||||||||| || |
|
|
| T |
8609254 |
atgtctctgcagaggaagaaaccagtggtaataagaaagatattactataacaaaggaaaatggtcgactttcaactgaagaaattgagagaatgattca |
8609155 |
T |
|
| Q |
209 |
ggaagctgacaatttcaa |
226 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
8609154 |
agaagctgagaatttcaa |
8609137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 8383676 - 8383845
Alignment:
| Q |
75 |
gtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaa |
174 |
Q |
| |
|
||||| ||| || |||||| | ||||| ||||||| |||||||| | |||||| ||| |||| | |||| | || |||||||||| ||||||| ||||| |
|
|
| T |
8383676 |
gtatgtttttctgtagatgttgatggtatattaaatgtctctgctaaagaagatacctgtgggaataagcaagatattacaataaagaatgaaaatggaa |
8383775 |
T |
|
| Q |
175 |
gattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagtt |
244 |
Q |
| |
|
| ||||||| || |||||||||||||||||||| || || || |||||||||||| ||||||||||||| |
|
|
| T |
8383776 |
gtttatcaactgatgaaattgagagaatgatccaagaggcagagaatttcaaggctgaagacatgaagtt |
8383845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 8601343 - 8601170
Alignment:
| Q |
74 |
agtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattgga |
173 |
Q |
| |
|
|||||||||| | |||||| | ||||| | |||||||| || || || ||||| ||| |||| | || | | |||||||||||||| ||||||| ||| |
|
|
| T |
8601343 |
agtatgcttttccatagattttgatggtattttaaacgtatccgcgacggaagatacctgtgggaataggcaagaaattacaataacgaatgaaaaggga |
8601244 |
T |
|
| Q |
174 |
agattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcaa |
247 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| |||||||| |||||||| | | |||||||||||||||| |
|
|
| T |
8601243 |
agactatcaaccgaagaaattgagagaatgatccaagaagctgagaatttcaaagatgaagacatgaagttcaa |
8601170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 29582640 - 29582811
Alignment:
| Q |
74 |
agtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattgga |
173 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||| ||| |||| |||||||||| ||| | ||| || || ||||||||||| |||| || |||| |
|
|
| T |
29582640 |
agtatgctttgctatagatgcagatggtatactaaatgtcactgctgaggaagaaaccactggaaataaaaaagagattacaataacaaatgtaaatgga |
29582739 |
T |
|
| Q |
174 |
agattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttc |
245 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||| || |||||||||| | |||| |||||||| |
|
|
| T |
29582740 |
agattgtcaactgaagaaattgagagaatgatccaagaagcagagaatttcaaggttgaagatctgaagttc |
29582811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 8581066 - 8580896
Alignment:
| Q |
77 |
atgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattggaaga |
176 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||| ||||||||| |||||||| | || ||||||||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
8581066 |
atgcttttctatagattctgatggtatattaaatgtctctgcagaggaagaaacaaatgctagtaagaaggctattacaataacgaatgaaaatggaaga |
8580967 |
T |
|
| Q |
177 |
ttatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcaa |
247 |
Q |
| |
|
| ||||| || |||||||||| |||||| ||||||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
8580966 |
ctttcaagagaggaaattgagaaaatgattttacaagctgaaatttttaaggctcaagacatggagttcaa |
8580896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 8537342 - 8537235
Alignment:
| Q |
140 |
taagaatgaaattacaataactaatgaaattggaagattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatg |
239 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||| || |||||| ||||||| || || |||||||| |||||||| || ||||||| |
|
|
| T |
8537342 |
taagaaagatattaccataactaatgaaattggaagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacata |
8537243 |
T |
|
| Q |
240 |
aagttcaa |
247 |
Q |
| |
|
|||||||| |
|
|
| T |
8537242 |
aagttcaa |
8537235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 8575558 - 8575498
Alignment:
| Q |
187 |
aagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcaa |
247 |
Q |
| |
|
||||||||| ||||||||| || |||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
8575558 |
aagaaattgcgagaatgattcaagaagctgaaattttcaaggctcaagacatggagttcaa |
8575498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 29578471 - 29578641
Alignment:
| Q |
74 |
agtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattgga |
173 |
Q |
| |
|
|||||| |||||||| ||||| ||||| ||||||| ||| |||| |||||||| | ||| | ||||| ||| || |||||||| ||||| | | || |
|
|
| T |
29578471 |
agtatgttttgctatcgatgcagatggtatattaaatgtcactgctgaggaagaaacaactggaaataagagtgagatcacaataacaaatgataataga |
29578570 |
T |
|
| Q |
174 |
agattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagtt |
244 |
Q |
| |
|
||| | |||| ||||||||||| |||||||||| |||||||| || ||||||| | |||| |||||||| |
|
|
| T |
29578571 |
agactttcaactcaagaaattgagcgaatgatccaagaagctgagaaattcaaggttgaagatatgaagtt |
29578641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 12527876 - 12527700
Alignment:
| Q |
74 |
agtatgctttgctatagatgctaatggtttattaaacgtctctgcaacagaagaaaccagtggtagtaagaatgaaattacaataactaatgaaattgga |
173 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||| |||||||| | ||| |||||||||||| |||||| || ||||||||||| ||||||| |||| |
|
|
| T |
12527876 |
agtatgctttgctatagatgctgacggtatattaaaagtctctgcgaaggaaaaaaccagtggtaataagaaagatattacaataacaaatgaaaatgga |
12527777 |
T |
|
| Q |
174 |
agattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcaaaaa |
250 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
12527776 |
agattatcaagtgaagaaattgggagaatgatccaggaagctgagaatttcaaggctgaagatatgaagttcaaaaa |
12527700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University