View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_18 (Length: 250)
Name: NF10973_low_18
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 43131852 - 43132095
Alignment:
| Q |
1 |
cttgttttggttgtttaaccaatgcctcaacgatattggctaatattctccttaatttaaccgttgaaaataagaatatttagaatcacaacgtatttga |
100 |
Q |
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| T |
43131852 |
cttgttttggttgtttaatcaatgcctcaacgacattggttaatattctccttagtttaactgttgaaaattagaatatttagaatcacaacgtatttga |
43131951 |
T |
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| Q |
101 |
tccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcataattataattatgtctaacatttgtgaaggttcatattgctttaagg |
200 |
Q |
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| T |
43131952 |
tccacctcaatttcatgtcttgaaatgacaa-tcaattcgatatgatgagcataattataattatgtctaacatttgtgaaggttcatattgctttaagg |
43132050 |
T |
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| Q |
201 |
ccaggccattttattttaaatcatgaattatttccctttgcttct |
245 |
Q |
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| T |
43132051 |
ctaggccattttattttaaatcatgaattatttccctttgcttct |
43132095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33635210 - 33635181
Alignment:
| Q |
1 |
cttgttttggttgtttaaccaatgcctcaa |
30 |
Q |
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| T |
33635210 |
cttgttttggttgtttaaccaatgcctcaa |
33635181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 18117473 - 18117406
Alignment:
| Q |
86 |
tcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcat |
153 |
Q |
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| T |
18117473 |
tcacaaggtctttgatccatcttaatttgatgtcctaaaatgacaattcaattagatatggtgagcat |
18117406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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