View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10973_low_2 (Length: 650)

Name: NF10973_low_2
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10973_low_2
NF10973_low_2
[»] chr5 (31 HSPs)
chr5 (501-635)||(35951483-35951617)
chr5 (29-130)||(29245938-29246039)
chr5 (29-116)||(6810159-6810246)
chr5 (29-117)||(12712557-12712645)
chr5 (28-125)||(24207682-24207781)
chr5 (29-116)||(12773822-12773909)
chr5 (28-126)||(5908679-5908777)
chr5 (28-126)||(12866542-12866640)
chr5 (28-130)||(15890207-15890308)
chr5 (32-126)||(28569012-28569106)
chr5 (35-112)||(10822531-10822608)
chr5 (29-125)||(2681217-2681313)
chr5 (38-126)||(16311284-16311372)
chr5 (25-113)||(27900405-27900493)
chr5 (28-99)||(4920826-4920897)
chr5 (28-99)||(22694919-22694990)
chr5 (28-126)||(30996596-30996694)
chr5 (32-113)||(2985151-2985232)
chr5 (32-144)||(6155893-6156003)
chr5 (28-117)||(17153169-17153258)
chr5 (32-125)||(20634186-20634279)
chr5 (32-125)||(20650300-20650393)
chr5 (302-378)||(35950461-35950537)
chr5 (78-206)||(39422396-39422524)
chr5 (28-99)||(4583119-4583190)
chr5 (28-99)||(42987497-42987568)
chr5 (28-113)||(12447381-12447466)
chr5 (29-126)||(38972923-38973020)
chr5 (81-125)||(18116509-18116553)
chr5 (29-125)||(23044983-23045079)
chr5 (78-134)||(27088354-27088410)
[»] chr8 (25 HSPs)
chr8 (31-178)||(8545288-8545434)
chr8 (28-126)||(20399592-20399690)
chr8 (21-113)||(14186313-14186405)
chr8 (28-130)||(37960948-37961050)
chr8 (28-113)||(17469255-17469340)
chr8 (37-126)||(27932422-27932511)
chr8 (29-94)||(33631921-33631986)
chr8 (32-99)||(1063511-1063578)
chr8 (31-125)||(1012622-1012715)
chr8 (31-177)||(27777137-27777283)
chr8 (28-126)||(32303061-32303159)
chr8 (28-98)||(45236065-45236135)
chr8 (21-126)||(14687392-14687497)
chr8 (31-168)||(30481369-30481506)
chr8 (32-99)||(34777070-34777137)
chr8 (28-170)||(39445522-39445664)
chr8 (32-105)||(30904050-30904123)
chr8 (34-99)||(40248388-40248453)
chr8 (28-91)||(24927949-24928012)
chr8 (59-126)||(29089812-29089879)
chr8 (28-99)||(29108839-29108910)
chr8 (31-66)||(36275045-36275080)
chr8 (29-99)||(9476030-9476100)
chr8 (28-110)||(24870030-24870112)
chr8 (32-137)||(43113605-43113710)
[»] chr7 (43 HSPs)
chr7 (29-126)||(27063144-27063241)
chr7 (28-126)||(12980382-12980480)
chr7 (28-169)||(7780013-7780154)
chr7 (38-124)||(8906581-8906667)
chr7 (34-126)||(10072477-10072569)
chr7 (28-99)||(16866174-16866245)
chr7 (31-98)||(26622959-26623026)
chr7 (29-99)||(32546198-32546268)
chr7 (28-126)||(38152892-38152990)
chr7 (29-126)||(22973394-22973491)
chr7 (28-136)||(3157088-3157196)
chr7 (37-201)||(3226861-3227025)
chr7 (32-116)||(5377094-5377178)
chr7 (29-113)||(18825875-18825959)
chr7 (28-99)||(41103661-41103732)
chr7 (28-126)||(21702664-21702762)
chr7 (28-126)||(33841083-33841181)
chr7 (32-113)||(3920547-3920628)
chr7 (28-97)||(38139811-38139880)
chr7 (30-126)||(30839124-30839220)
chr7 (28-99)||(23475280-23475351)
chr7 (28-99)||(27850343-27850414)
chr7 (37-100)||(44734373-44734436)
chr7 (31-125)||(16079021-16079115)
chr7 (36-114)||(25782909-25782987)
chr7 (32-94)||(30650640-30650702)
chr7 (28-126)||(35074475-35074573)
chr7 (28-126)||(37182280-37182377)
chr7 (29-130)||(18683980-18684081)
chr7 (28-113)||(19440013-19440098)
chr7 (28-116)||(10995834-10995922)
chr7 (78-126)||(39317050-39317098)
chr7 (54-126)||(42908031-42908103)
chr7 (31-99)||(45380115-45380183)
chr7 (28-91)||(18125253-18125316)
chr7 (21-126)||(37218001-37218108)
chr7 (28-107)||(45708874-45708953)
chr7 (28-126)||(2630564-2630661)
chr7 (36-126)||(45885755-45885845)
chr7 (32-117)||(16811739-16811823)
chr7 (28-113)||(24425385-24425470)
chr7 (29-113)||(31426014-31426098)
chr7 (29-113)||(44845138-44845222)
[»] chr1 (36 HSPs)
chr1 (35-126)||(42707827-42707917)
chr1 (28-126)||(49250763-49250861)
chr1 (29-113)||(16433170-16433251)
chr1 (21-99)||(25154844-25154922)
chr1 (28-110)||(28297935-28298017)
chr1 (28-130)||(29871271-29871373)
chr1 (28-126)||(36187210-36187308)
chr1 (31-113)||(39219262-39219344)
chr1 (29-126)||(9982880-9982977)
chr1 (29-126)||(23058468-23058565)
chr1 (28-136)||(10778547-10778655)
chr1 (29-125)||(16237295-16237391)
chr1 (30-134)||(34673264-34673368)
chr1 (28-99)||(12495011-12495082)
chr1 (28-99)||(24236778-24236849)
chr1 (28-99)||(29936417-29936488)
chr1 (59-126)||(33293521-33293588)
chr1 (35-110)||(34060031-34060106)
chr1 (28-99)||(34611074-34611145)
chr1 (35-98)||(50426679-50426742)
chr1 (34-168)||(17134954-17135088)
chr1 (28-126)||(23490761-23490859)
chr1 (31-125)||(42439661-42439755)
chr1 (28-126)||(44615465-44615563)
chr1 (28-126)||(44793006-44793104)
chr1 (28-201)||(19572427-19572600)
chr1 (19-116)||(41476952-41477049)
chr1 (28-71)||(16903524-16903567)
chr1 (28-99)||(51421859-51421930)
chr1 (37-99)||(3628002-3628064)
chr1 (34-116)||(34085242-34085324)
chr1 (28-117)||(5283592-5283681)
chr1 (28-125)||(17091950-17092047)
chr1 (34-99)||(18354097-18354162)
chr1 (41-130)||(19003652-19003741)
chr1 (29-130)||(45866171-45866272)
[»] chr6 (24 HSPs)
chr6 (28-130)||(2367326-2367428)
chr6 (20-113)||(14410858-14410951)
chr6 (32-125)||(20349068-20349161)
chr6 (29-125)||(256483-256579)
chr6 (28-126)||(12678084-12678182)
chr6 (28-126)||(32532540-32532638)
chr6 (32-125)||(28079687-28079780)
chr6 (28-99)||(32853844-32853915)
chr6 (28-126)||(5863373-5863471)
chr6 (28-98)||(12309572-12309642)
chr6 (28-126)||(27534684-27534782)
chr6 (31-136)||(5108911-5109016)
chr6 (28-99)||(27738772-27738843)
chr6 (28-126)||(3483913-3484011)
chr6 (32-149)||(14254962-14255078)
chr6 (36-97)||(32959868-32959929)
chr6 (28-99)||(15498324-15498395)
chr6 (28-99)||(24225698-24225769)
chr6 (28-99)||(32053088-32053159)
chr6 (28-94)||(12141385-12141451)
chr6 (81-178)||(21875587-21875684)
chr6 (31-99)||(7393904-7393972)
chr6 (30-126)||(10142508-10142604)
chr6 (29-125)||(18908894-18908990)
[»] chr4 (40 HSPs)
chr4 (28-146)||(26564837-26564955)
chr4 (28-125)||(4741208-4741305)
chr4 (28-136)||(6382253-6382361)
chr4 (28-168)||(6481984-6482124)
chr4 (31-134)||(42907895-42907998)
chr4 (28-126)||(31918549-31918647)
chr4 (31-124)||(21956807-21956900)
chr4 (31-125)||(14605917-14606011)
chr4 (29-99)||(21544586-21544656)
chr4 (29-126)||(30672970-30673065)
chr4 (28-106)||(32585495-32585573)
chr4 (28-126)||(44317541-44317639)
chr4 (28-110)||(47550360-47550442)
chr4 (28-113)||(1724314-1724399)
chr4 (28-125)||(11122861-11122958)
chr4 (28-124)||(7608976-7609072)
chr4 (29-113)||(29527819-29527903)
chr4 (28-91)||(5902640-5902703)
chr4 (30-117)||(12825461-12825548)
chr4 (30-124)||(11028081-11028175)
chr4 (28-126)||(15987253-15987351)
chr4 (29-107)||(45065256-45065334)
chr4 (29-99)||(48459488-48459558)
chr4 (30-71)||(568425-568466)
chr4 (81-126)||(37349171-37349216)
chr4 (28-201)||(55826539-55826712)
chr4 (31-130)||(1866536-1866635)
chr4 (28-99)||(31752462-31752533)
chr4 (21-71)||(12505576-12505626)
chr4 (28-98)||(25298852-25298922)
chr4 (28-66)||(33516123-33516161)
chr4 (31-169)||(36919132-36919270)
chr4 (28-130)||(39665795-39665897)
chr4 (81-126)||(12075622-12075667)
chr4 (31-116)||(16575121-16575206)
chr4 (29-106)||(31415942-31416019)
chr4 (34-126)||(10302096-10302188)
chr4 (81-168)||(12505489-12505577)
chr4 (31-99)||(25941147-25941215)
chr4 (29-65)||(47103745-47103781)
[»] chr2 (25 HSPs)
chr2 (28-116)||(45256824-45256912)
chr2 (21-113)||(35248388-35248480)
chr2 (28-113)||(17845394-17845479)
chr2 (28-113)||(35965336-35965420)
chr2 (30-126)||(13830739-13830834)
chr2 (28-126)||(30846947-30847045)
chr2 (28-170)||(36128052-36128194)
chr2 (29-126)||(38342509-38342606)
chr2 (28-91)||(9632387-9632450)
chr2 (28-99)||(22900795-22900866)
chr2 (28-99)||(24414149-24414220)
chr2 (28-99)||(37999484-37999555)
chr2 (28-110)||(13705367-13705449)
chr2 (35-125)||(37106700-37106790)
chr2 (28-100)||(8915953-8916025)
chr2 (54-126)||(26755767-26755839)
chr2 (29-113)||(43371555-43371639)
chr2 (54-97)||(3179546-3179589)
chr2 (30-93)||(42798011-42798074)
chr2 (29-99)||(3547168-3547238)
chr2 (29-98)||(44057884-44057954)
chr2 (31-113)||(34320627-34320711)
chr2 (29-97)||(14331529-14331597)
chr2 (29-116)||(30978929-30979014)
chr2 (38-110)||(45115569-45115641)
[»] scaffold0036 (1 HSPs)
scaffold0036 (31-126)||(33396-33491)
[»] chr3 (27 HSPs)
chr3 (31-130)||(4016030-4016129)
chr3 (28-99)||(44172626-44172697)
chr3 (28-99)||(44179326-44179397)
chr3 (28-166)||(4553190-4553328)
chr3 (28-126)||(19111734-19111832)
chr3 (32-126)||(34119660-34119754)
chr3 (28-126)||(39728671-39728769)
chr3 (28-134)||(42758374-42758480)
chr3 (28-110)||(48305647-48305729)
chr3 (28-94)||(44639274-44639340)
chr3 (28-126)||(44953425-44953523)
chr3 (28-99)||(52198155-52198226)
chr3 (32-126)||(4557295-4557389)
chr3 (32-126)||(30904806-30904899)
chr3 (28-126)||(39655263-39655361)
chr3 (28-126)||(44252747-44252845)
chr3 (28-126)||(48390807-48390905)
chr3 (28-126)||(52572609-52572707)
chr3 (28-126)||(54317144-54317242)
chr3 (79-188)||(23910180-23910289)
chr3 (31-91)||(23546967-23547027)
chr3 (34-126)||(23580833-23580925)
chr3 (29-112)||(1772403-1772486)
chr3 (28-91)||(7469803-7469866)
chr3 (28-91)||(29284336-29284399)
chr3 (29-135)||(10043263-10043369)
chr3 (28-126)||(49580064-49580162)
[»] scaffold0184 (1 HSPs)
scaffold0184 (29-126)||(2970-3067)
[»] scaffold0013 (2 HSPs)
scaffold0013 (29-126)||(128111-128208)
scaffold0013 (29-66)||(105519-105556)
[»] scaffold0005 (1 HSPs)
scaffold0005 (31-125)||(211367-211461)
[»] scaffold0294 (1 HSPs)
scaffold0294 (31-124)||(14778-14871)
[»] scaffold0014 (1 HSPs)
scaffold0014 (65-126)||(14174-14234)
[»] scaffold1118 (1 HSPs)
scaffold1118 (81-136)||(661-716)
[»] scaffold0157 (1 HSPs)
scaffold0157 (21-168)||(14851-14988)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 501 - 635
Target Start/End: Original strand, 35951483 - 35951617
Alignment:
Q  501 ttgatcaaacaccgggaatttcactcactctttcataaagttgaatcacactctgatatcagtctagaacaccgaattaaattgttacattgatctaaaa 600  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||    
T  35951483 ttgatcaaacactgggaattgcactcactctttcgtaaagttgaatcacactctgatatcggtctagaacaccgaagtaaattgttacattgataaaaaa 35951582  T
Q  601 acaacgacaaatgtgagtttatacatcacattttt 635  Q
    ||||||||||||||||||||||||||||| |||||    
T  35951583 acaacgacaaatgtgagtttatacatcactttttt 35951617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 29246039 - 29245938
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaaccta 128  Q
    |||| |||||||||||| |||||| |||| ||||| |   |||||||| |||||||||||||||||||||| |||||||||| || || |||||||||||    
T  29246039 gggtatgggtatgggtttggggtgggtacctatatacatgttattcgtcccatacccgtgttttgaaatcggagaaaactcatacccatacccaaaccta 29245940  T
Q  129 gt 130  Q
    ||    
T  29245939 gt 29245938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 6810159 - 6810246
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||||||||||||||||||||||||||||||||| | |||  |||||| |||||||||| | ||||||  |||||| ||||||||    
T  6810159 gggtttgggtatgggttcggggtgagtacttatatcctcgttacccgttccgtacccgtgttctaaaatcggggaaaacccaaactca 6810246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 12712645 - 12712557
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcag 117  Q
    ||||||||||||||||||| |||| |||| |||||| || |||| ||| || ||||||| ||||||||||| ||||||| |||||||||    
T  12712645 gggtttgggtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaaactcag 12712557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 24207682 - 24207781
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagta--cttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||||| ||| ||||| |||  ||||||||||  |||||||||| ||||| ||||||||||||||  |||||||||||| || ||||||||    
T  24207682 cgggtttgggtatggcttcagggtgggtatacttatatccctgttattcgttcgatacctgtgttttgaaatcggggaaaactcaaacccatacccaaac 24207781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 12773909 - 12773822
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||| ||||||||||| |||| |||| |||||| || |||| ||| || ||||||| ||||||||||| ||||||| ||||||||    
T  12773909 gggtttgagtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaaactca 12773822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 5908777 - 5908679
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||| |||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  ||||||||| || || |||||||||    
T  5908777 cgggtttgggtatgggtttggggtgtgtacatatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactcatacccatacccaaacc 5908679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 12866640 - 12866542
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| |||||||||||||| |||| |||| ||||| ||  |||  ||| |||||||| ||||||||||||| |||||||||| || || |||||||||    
T  12866640 cgggtatgggtatgggttcgcggtgggtacctatatacctgttacccgtcccatacccatgttttgaaatcggagaaaactcatacccatacccaaacc 12866542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 15890207 - 15890308
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||| |||||||||||||||| || |||| ||||| ||| |||  ||| |||||||||||||||||||||| ||||||| || || || | ||||||||    
T  15890207 cgggtatgggtatgggttcggg-tgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccatacacatagccaaacct 15890305  T
Q  128 agt 130  Q
    |||    
T  15890306 agt 15890308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 28569106 - 28569012
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||| |||| ||||||||| |||  ||| || ||||||  |||||||||||  |||||  |||||||| |||||||||    
T  28569106 tttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccgcattttgaaatcggggaaaatccaaactcatacccaaacc 28569012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 10822608 - 10822531
Alignment:
Q  35 gggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaa 112  Q
    |||||||||||||||||| |||| |||| |||| |||  ||| | |||||||||||||||||||| ||||||| ||||    
T  10822608 gggtatgggttcggggtgggtacatataaccccgttacccgtcctatacccgtgttttgaaatcggagaaaacccaaa 10822531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 2681217 - 2681313
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||||||||||||||  |||| ||||||||||||  | | || |||| || |||||||||||  |||||| ||||||||  |||||||    
T  2681217 gggtttgggtatgggttcggggtggatactcatatccccattacccatcccgtacctgtattttgaaatcggggaaaacccaaactcatgcccaaac 2681313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 16311372 - 16311284
Alignment:
Q  38 tatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||| |||| ||||||||  |||| |||  | ||| ||||||||||||||| | |||||||||||||| | |||||||    
T  16311372 tatgggttcggggtgggtacctatatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaactcaaactcatatccaaacc 16311284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 27900493 - 27900405
Alignment:
Q  25 gggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||| |||||||||||||||| | || |||| ||||||| |||||  ||| |||||||| |||||||||||||   |||||||||||    
T  27900493 gggcggatttgggtatgggttcgagatgggtacctatatccacattacccgtcccatacccatgttttgaaatcgggaaaaactcaaac 27900405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 4920826 - 4920897
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||||||  ||| ||||| ||| |||  ||| ||||||||||||||||| ||||    
T  4920826 cgggtttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcg 4920897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 22694990 - 22694919
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| | ||| ||| ||| |||| |||||||||| |||||| ||||    
T  22694990 cgggtttgggtatgggttcggggtgggtacctctatacccgttagtcgtcccatacccgtattttgagatcg 22694919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 30996596 - 30996694
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||| || |||||||||| |||| ||||| ||| |||   || |||||| |||||||| |||||| ||||||| || ||||| |||||||||    
T  30996596 cgggtttgggtgtgtgttcggggtgggtacctatatacccgttacctgtcccatactcgtgttttaaaatcggagaaaacccatactcatacccaaacc 30996694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 2985151 - 2985232
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||| |||||| ||||||| ||||| ||| |||  ||| ||| |||| ||| ||||||||| |||||||||||||    
T  2985151 tttgggtatggtttcgggatgagtacctatatacccgttacccgtcccaaacccatgtcttgaaatcggagaaaactcaaac 2985232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 6156003 - 6155893
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagtt 131  Q
    ||||||||||||||||||||| |||| ||||| ||  |||   || | ||||||||||||||||||||  |||||| ||||| || ||||||||| |||     
T  6156003 tttgggtatgggttcggggtgggtacatatatacc--ttacctgtcctatacccgtgttttgaaatcggggaaaacccaaacacatacccaaacccagtc 6155906  T
Q  132 aaagcaaagaaaa 144  Q
    ||| | |||||||    
T  6155905 aaaacgaagaaaa 6155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 17153169 - 17153258
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcag 117  Q
    |||||||||||||||||| ||| ||||||| ||||||    |||| ||| || ||||| |||||| |||||| | |||||||||||||||    
T  17153169 cgggtttgggtatgggtttgggatgagtacatatatcatagttatccgtcccgtacccatgttttaaaatcggaaaaaactcaaactcag 17153258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 20634186 - 20634279
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||||||||||||| | |||||||| ||||  |||  |||| |||| |||| |||| |  ||||||| ||||||| ||||||||    
T  20634186 tttgggtatgggttcggggtgagtgcatatatccctattacccgtctcatatccgtattttaaaattggggaaaactgaaactcatacccaaac 20634279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 20650300 - 20650393
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||||||||||||| | |||||||| ||||  |||  |||| |||| |||| |||| |  ||||||| ||||||| ||||||||    
T  20650300 tttgggtatgggttcggggtgagtgcatatatccctattacccgtctcatatccgtattttaaaattggggaaaactgaaactcatacccaaac 20650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 35950461 - 35950537
Alignment:
Q  302 actcctaaaagacctaaaatattgtggtattcattattacattaaactaagaacaactttgaaagagctaaaatgtt 378  Q
    |||| ||||||||||||| || ||||||||  || || |||||||| ||||||||| ||| |||||| |||||||||    
T  35950461 actcttaaaagacctaaattagtgtggtatagataatcacattaaattaagaacaattttaaaagagttaaaatgtt 35950537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 39422396 - 39422524
Alignment:
Q  78 ccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaagcaaagaaaatctgtaaatttaagtttggttcggacaggtacc 177  Q
    |||||||||||||||||||||||  ||||| |||||||| | ||||||| | | |||||   ||||| |||| |||||  || |||||||| | | ||||    
T  39422396 ccatacccgtgttttgaaatcgagaaaaacccaaactcatatccaaacccaatcaaagcggggaaaacctgtcaatttgggtgtggttcgggcggttacc 39422495  T
Q  178 cacaagtatggactgtgttgccatttcta 206  Q
    |||| |||||  || ||||||||| ||||    
T  39422496 cacaggtatgagctttgttgccatgtcta 39422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 4583119 - 4583190
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||| |||||||||||| |||||| | || ||||| ||| |||  ||| ||||||||||||||||||||||    
T  4583119 cgggtatgggtatgggtttggggtgggaacctatatacccgttacccgtcccatacccgtgttttgaaatcg 4583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 42987568 - 42987497
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||| || |||| |||||  || |||  ||| ||||||||||||||||| ||||    
T  42987568 cgggtttgggtatgggttcgggatgggtacctatatatccgttacacgtcccatacccgtgttttgagatcg 42987497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 12447381 - 12447466
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||| ||||||||||| |||| ||||| |||||||   || ||||||| |||||||  |||| | |||||| |||||    
T  12447381 cgggtttgggtataggttcggggtgggtacctatatacccattacctgtcccatacctgtgttttacaatcaaggaaaacccaaac 12447466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 38972923 - 38973020
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||| |||||||||||||||| |||| ||||| ||| |||    | |||||||| |||||||||||||   ||||| |||||||| ||| |||||    
T  38972923 gggtttgagtatgggttcggggtgggtacctatattcccgttacctatcccatacccatgttttgaaatcgggaaaaacccaaactcatacctaaacc 38973020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 18116553 - 18116509
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  18116553 tacccgtattttgaaatcggagaaaacccaaactcatacccaaac 18116509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 23045079 - 23044983
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||| ||||||||||||||||| |||| |||||| || |||  | | || ||||||| |||||||||||  ||||||  |||| || ||||||||    
T  23045079 gggttttggtatgggttcggggtgggtacatatatctccgttacccatcccgtacccgtattttgaaatcggggaaaacctaaacccatacccaaac 23044983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 27088410 - 27088354
Alignment:
Q  78 ccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaa 134  Q
    |||||||||||| || ||||||| ||||||  |||| || |||||||||||||||||    
T  27088410 ccatacccgtgtcttaaaatcgaggaaaacctaaacacatacccaaacctagttaaa 27088354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 8545434 - 8545288
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    ||||| |||||||||||||||| |||  ||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||| | |||||| || |||    
T  8545434 gtttgagtatgggttcggggtgggtatctatatccccgttactcgttccatacccgtgttttgaaatcggagaaaacccaaacttatacccaatccaagt 8545335  T
Q  131 taaagcaaagaaaatctgtaaatttaagtttggttcggacaggtaccc 178  Q
    ||||||  |||||| | || ||||| ||||||||| ||||||||||||    
T  8545334 taaagcggagaaaa-ccgtcaatttgagtttggtttggacaggtaccc 8545288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 20399592 - 20399690
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||| |||||||||||||| |||  ||||| ||| |||  ||| |||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  20399592 cgggtttgggaatgggttcggggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccaaacccatacccaaacc 20399690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 14186313 - 14186405
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||| ||||||||||||||||||| |||||||||| |||||  || |||  | | |||||||||||||||||||||||  |||||||||||    
T  14186313 ttcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcgagaaaaactcaaac 14186405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 37961050 - 37960948
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||||||||| |||||||||| |||| ||||| ||  |||   || ||||||||||||||| ||||||  |||||| |||||||| ||||||||||    
T  37961050 cgggtttgggtatgagttcggggtgtgtacctatatacctgttacctgtcccatacccgtgtttttaaatcggggaaaacccaaactcatacccaaacct 37960951  T
Q  128 agt 130  Q
    |||    
T  37960950 agt 37960948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 17469255 - 17469340
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||||||||||||||| |||||| |||| ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| |||||    
T  17469255 cgggtttgggtatgggtttggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaac 17469340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 27932422 - 27932511
Alignment:
Q  37 gtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||| |||| ||||| ||| ||| |||| ||||||||||||||||||||||  |||||| || || || |||||||||    
T  27932422 gtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacc 27932511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 33631986 - 33631921
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttga 94  Q
    |||| |||||||||||| |||||| |||||||||||||||||| |||| |||||||| ||||||||    
T  33631986 gggtatgggtatgggtttggggtgggtacttatatccccattactcgtcccatacccatgttttga 33631921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 1063511 - 1063578
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||| |||||||||| |||||||||| ||| |||  ||| ||||||||||||||||||||||    
T  1063511 tttgggtatgagttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcg 1063578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 1012622 - 1012715
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||||||||||| |||| ||||| |||||||  ||| |||||| | |||||| ||||||  |||||| |||||||| ||||||||    
T  1012622 gtttgggtatgggttcggggtgggtacctatatacccattacccgtcccatactcatgtttt-aaatcggggaaaacccaaactcatacccaaac 1012715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 27777283 - 27777137
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    |||||||||||||||||||||| |||| | |||| |  |||   || || |||| ||||||||||||||   ||||||||||| || ||||||||| |||    
T  27777283 gtttgggtatgggttcggggtgggtacctgtatctctgttacctgtcccgtacctgtgttttgaaatcgggaaaaactcaaacacatacccaaacccagt 27777184  T
Q  131 taaagcaaagaaaatctgtaaatttaagtttggttcggacaggtacc 177  Q
     ||| |  |||||| | || || |||||||||||||||| |||||||    
T  27777183 caaaacggagaaaacccgtcaaattaagtttggttcggataggtacc 27777137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 32303061 - 32303159
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||||    
T  32303061 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacc 32303159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 45236065 - 45236135
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||||||  ||| |||||||||||||||||||||    
T  45236065 cgggtatggatatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatc 45236135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 14687392 - 14687497
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacc 120  Q
    |||||| || ||||||||||||||||||||||  ||| ||||||||  ||  |||| ||||||| ||||||||||||||  |||||| ||||  || |||    
T  14687392 ttcaggacgagtttgggtatgggttcggggtggatacatatatccctgtttctcgtcccatacctgtgttttgaaatcggggaaaacccaaatccatacc 14687491  T
Q  121 caaacc 126  Q
    ||||||    
T  14687492 caaacc 14687497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 30481506 - 30481369
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    |||||||||||||||||||||| |||| ||||||| ||||| ||||  ||||| ||| ||||||||||    ||||| |||||||| || |||||| | |    
T  30481506 gtttgggtatgggttcggggtgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaacccaaactcatactcaaacccaat 30481407  T
Q  131 taaagcaaagaaaatctgtaaatttaagtttggttcgg 168  Q
     ||| ||  |||||||  | |||||| |||||||||||    
T  30481406 caaaacagggaaaatccatcaatttaggtttggttcgg 30481369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 34777070 - 34777137
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||| |||| || || ||  ||| |||||||||||||||||||||| ||||    
T  34777070 tttgggtatgggttcggggtgggtacctaaatacctgttactcgttccatacccgtgttttgagatcg 34777137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 39445664 - 39445522
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||| |||||||| |||||||||| |||| ||||  ||| |||   || ||||||||||||||||||||||   ||||| || || || ||||||||||    
T  39445664 cgggtatgggtatgagttcggggtgggtacctataaacccgttacctgtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacct 39445565  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcggac 170  Q
    ||| ||| |   ||||||| || || || ||||||||||||||    
T  39445564 agtcaaaacggggaaaatccgtcaaattgagtttggttcggac 39445522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 30904050 - 30904123
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaa 105  Q
    |||||||||||||  |||||| ||||||||||| ||||||  |||  | |||||||||||||||||||| ||||    
T  30904050 tttgggtatgggtatggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatcgaggaaa 30904123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 40248453 - 40248388
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||| || |||| ||||| ||| |||| |||  |||||||||||||||||||||    
T  40248453 tgggtatgggttcgggatgggtacctatatacccgttatccgtctcatacccgtgttttgaaatcg 40248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 24927949 - 24928012
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  |||  |||||||||||||    
T  24927949 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtctcatacccgtgttt 24928012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 29089812 - 29089879
Alignment:
Q  59 tatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| |||||||| |||  ||||||||||| |||||||||||||| ||  ||||||| |||||||||    
T  29089812 tatatacccattatccgtctcatacccgtgtcttgaaatcgaagaatacctaaactcatacccaaacc 29089879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 29108910 - 29108839
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||| ||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||| |||||| ||||||    
T  29108910 cgggtatgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccatgttttaaaatcg 29108839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 36275045 - 36275080
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccc 66  Q
    |||| |||||||||||||||||||||||||||||||    
T  36275045 gtttaggtatgggttcggggtgagtacttatatccc 36275080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 9476100 - 9476030
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||| | || || || |||| |||||||||||    
T  9476100 gggtttgggtatgggttcgaggtgggtatttatatccccgttacttgtcccgtatccgttttttgaaatcg 9476030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 24870112 - 24870030
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    ||||||| |||||||| |||||||| |||| ||||| ||| |||  |||  |||||||||||||| ||||||  |||||||||    
T  24870112 cgggtttaggtatgggctcggggtgggtacctatatacccgttacccgtcacatacccgtgttttaaaatcggggaaaactca 24870030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 43113710 - 43113605
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagtt 131  Q
    |||||||||| |||||||||| |||| ||||| ||  |||  ||| |||| |||||||||||||||||   ||||| ||| |||| || |||||| |||     
T  43113710 tttgggtatgagttcggggtgggtacctatatacctgttacccgtcccatgcccgtgttttgaaatcgggaaaaacccaatctcatacgcaaacccagtc 43113611  T
Q  132 aaagca 137  Q
    ||||||    
T  43113610 aaagca 43113605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 27063144 - 27063241
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||| ||| |  ||||||| |||||||||||| ||||||||||||||| |||||||||    
T  27063144 gggtttgggtatgagttcggggtgagtacatatatccccgttatccgtcctgtacccgtattttgaaatcgaggaaaactcaaactcatacccaaacc 27063241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 12980382 - 12980480
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||||||||| |||||||  ||| ||||||||||||||||||||||  ||||||  |||| || |||||||||    
T  12980382 cgggtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaaccaaaacccatacccaaacc 12980480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 7780013 - 7780154
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||| ||||||||||| |||| ||||| |||||||| ||| ||||||||||||||||| ||||  |||||| || || || |||||||||     
T  7780013 cgggtttgggtataggttcggggtgggtacctatatacccattatccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaaccc 7780112  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcgga 169  Q
    ||| ||| |   ||||||| || || || |||||||||||||    
T  7780113 agtcaaaacggggaaaatccgtcaaattgagtttggttcgga 7780154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 8906667 - 8906581
Alignment:
Q  38 tatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaa 124  Q
    ||||||||||||||| |||| |||| |||| ||||||||  ||||| ||||||||||||||| ||||||||||||| || |||||||    
T  8906667 tatgggttcggggtgggtacatataaccccgttattcgtctcatactcgtgttttgaaatcggagaaaactcaaacccatacccaaa 8906581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 10072477 - 10072569
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||| |||| ||||| ||| |||  ||||||||||||||||||||||||||  |||||| || || || |||||||||    
T  10072477 tgggtatgggttcggggtgggtacctatatacccgttacccgttccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacc 10072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 16866174 - 16866245
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| ||| ||| |||| ||||||||||||||||| ||||    
T  16866174 cgggtttgggtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgagatcg 16866245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 26622959 - 26623026
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    |||||||||||||||||||||| |||||||||| |||||||  | | |||||||||||||||||||||    
T  26622959 gtttgggtatgggttcggggtgggtacttatatacccattacccatcccatacccgtgttttgaaatc 26623026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 32546198 - 32546268
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||||| |||| ||||||||| |||  |||||| ||||||| |||||||||||    
T  32546198 gggtttgggtatgggttcggggtgggtacatatatccccgttacccgttccgtacccgtattttgaaatcg 32546268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 38152892 - 38152990
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||| ||||||||||||||||| |||| |||||  || |||| |||||||||||| |||||||||||||  |||||| || || || |||||||||    
T  38152892 cgggtttaggtatgggttcggggtgggtacctatatagccgttatccgttccatacccatgttttgaaatcggggaaaacccatacccatacccaaacc 38152990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 22973394 - 22973491
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||  ||| || ||||||| |||||||||||  |||||| ||||| || |||||||||    
T  22973394 gggtttgggtatgggttcgaggtgggtacagatatccccattacccgtcccgtacccgtattttgaaatcgtggaaaacccaaacccatacccaaacc 22973491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 3157088 - 3157196
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||| ||||||| ||| |||| ||||||||| |||| ||| |||||||| | |||||||||||  ||||||  |||| || |||||||||     
T  3157088 cgggtttgggtataggttcggtgtgggtacctatatccccgttatccgtcccatacccatattttgaaatcggggaaaacctaaacccatacccaaacca 3157187  T
Q  128 agttaaagc 136  Q
    ||| |||||    
T  3157188 agtcaaagc 3157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 3227025 - 3226861
Alignment:
Q  37 gtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaagc 136  Q
    |||||||||||||||| |||| ||||| ||  |||  ||| ||||||||||||||||||||||  |||||| || || || || |||||  ||||||| |    
T  3227025 gtatgggttcggggtgggtacctatattcctgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatactcaaactcagttaaaac 3226926  T
Q  137 aaagaaaatctgtaaatttaagtttggttcggacaggtacccacaagtatggactgtgttgccat 201  Q
     | ||||||| || || ||  ||||||||||||| |||| || || ||||||| | |||||||||    
T  3226925 gaggaaaatccgtcaaattgggtttggttcggacgggtaaccgcatgtatggattttgttgccat 3226861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 5377094 - 5377178
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||| ||||||||||||||  |||||| ||||||||    
T  5377094 tttgggtatgggttcggggtgggtacctatataccctttacccgtcccatacctgtgttttgaaatcggggaaaacccaaactca 5377178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 18825959 - 18825875
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||| |||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| |||||    
T  18825959 gggtttgggtacgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaac 18825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 41103661 - 41103732
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||  |||||||||||||||| |||||||||| ||| |||  ||| ||||||||||||||||||||||    
T  41103661 cgggtttatgtatgggttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcg 41103732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 21702664 - 21702762
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||| |||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || ||||| |||||||||    
T  21702664 cgggttggggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatactcatacccaaacc 21702762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 33841083 - 33841181
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| || ||||||||||||||||||||| |||| ||   |||  ||| ||||||||||||||||||||||  ||||||||||| ||| || ||||||    
T  33841083 cgggtatgagtatgggttcggggtgagtacatataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaactcaaattcatactcaaacc 33841181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 3920547 - 3920628
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||||| |||| ||||| ||  |||| ||| ||||||| ||||||||||||||  |||||| |||||    
T  3920547 tttgggtatgggttcggggtgggtacctatatacctgttatccgtcccataccagtgttttgaaatcggggaaaacccaaac 3920628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 38139880 - 38139811
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaat 97  Q
    ||||||||| ||||||||||||||| |||||||||| | |||||  ||| |||||| |||||||||||||    
T  38139880 cgggtttggttatgggttcggggtgggtacttatatactcattacccgtcccatactcgtgttttgaaat 38139811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 30839220 - 30839124
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||| ||| |||||||||   ||| ||||||| | ||| |||| |||||||||| ||||||||||   ||||||||||||||| |||||||||    
T  30839220 ggtttgggcatgagttcggggtagatacatatatccacgttactcgtcccatacccgtattttgaaatcagggaaaactcaaactcatacccaaacc 30839124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 23475351 - 23475280
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||  ||| |||| |||||||||||||  | | ||| ||||||||||||||||||    
T  23475351 cgggtttgggtatgggttcgaagtgggtacatatatccccattacccatcccaaacccgtgttttgaaatcg 23475280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 27850414 - 27850343
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||| || |||| ||||  ||| |||  ||| ||||||||||||||||||||||    
T  27850414 cgggtttgggtatgggttcgggatgggtacctatacacccgttacccgtcccatacccgtgttttgaaatcg 27850343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 44734436 - 44734373
Alignment:
Q  37 gtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcga 100  Q
    |||||||||||||||| |||| ||||| |||||||   || |||||||||||||||||||||||    
T  44734436 gtatgggttcggggtgggtacctatatacccattaccggtcccatacccgtgttttgaaatcga 44734373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 16079021 - 16079115
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||| |||| |||||| | || ||||| ||| |||  ||| ||||||||||||||||| |||| ||||||| |||||| | ||||||||    
T  16079021 gtttgggtataggtttggggtgggcacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaaacccaaacttatacccaaac 16079115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 25782987 - 25782909
Alignment:
Q  36 ggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaact 114  Q
    |||||| |||||||||| |||| ||||| |||||||| |||  ||||||||||||||  ||||| ||||||| ||||||    
T  25782987 ggtatgagttcggggtgggtacctatatacccattatccgtctcatacccgtgttttataatcggagaaaacccaaact 25782909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 30650640 - 30650702
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttga 94  Q
    ||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||||||    
T  30650640 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttga 30650702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 35074475 - 35074573
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||| || |||| ||||| ||| |||  ||| ||||||||||||||| | ||||  |||||| || || || |||||||||    
T  35074475 cgggtttgggtatgggttcgggttgggtacctatatacccgttacccgtcccatacccgtgttttaagatcggggaaaacccatacccatacccaaacc 35074573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 37182280 - 37182377
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| |||||||||||||||  ||||||| ||||| |||  ||  ||| |||||||||||||||||| ||| ||||||| || ||||| |||||||||    
T  37182280 cgggtatgggtatgggttcgga-tgagtacctatatacccgctacccgtcccatacccgtgttttgaattcggagaaaacccatactcatacccaaacc 37182377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 18683980 - 18684081
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaaccta 128  Q
    ||||||||||||||||||| ||||  ||| ||||||||  |||  ||| || ||||||| |||||||||||  |||||| | ||| || |||||||||||    
T  18683980 gggtttgggtatgggttcgaggtggatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccaaaccta 18684079  T
Q  129 gt 130  Q
    ||    
T  18684080 gt 18684081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 19440098 - 19440013
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||||  ||| |||| |||||||||||||  | | ||| ||||||||||| |||||   ||||||||||||    
T  19440098 cgggtttgggtatgggttcgaagtgggtacatatatccccattacccatcccaaacccgtgttttcaaatcagggaaaactcaaac 19440013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 10995922 - 10995834
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||| ||||||||||||||||||| |||  |||| |||  |||  ||| |||||||||||| |||||||||  |||||| ||||||||    
T  10995922 cgggtatgggtatgggttcggggtgggtatatataaccctgttacccgtcccatacccgtgtcttgaaatcggggaaaacccaaactca 10995834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 39317050 - 39317098
Alignment:
Q  78 ccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||| ||||||||| ||||| | |||||||    
T  39317050 ccatacccgtgttttgaaatcgaggaaaactcatactcatatccaaacc 39317098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 42908103 - 42908031
Alignment:
Q  54 gtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||| |||||||||||||  ||| || ||||||| |||||||||||  |||||| |||||||| |||||||||    
T  42908103 gtacatatatccccattacccgtcccgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacc 42908031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 45380115 - 45380183
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||| ||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||| |||||||||||    
T  45380115 gtttaggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgaaatcg 45380183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 18125316 - 18125253
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    |||||||||||||| |||||||||| |||| ||||| ||| |||  ||| ||||||||||||||    
T  18125316 cgggtttgggtatgcgttcggggtgggtacctatatacccgttacccgtcccatacccgtgttt 18125253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 37218001 - 37218108
Alignment:
Q  21 ttcagggcgggtttggg-tatgggttcggggtgagtacttatatcccca-ttattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcaga 118  Q
    |||||| |||||||||| |||| ||||||| |  ||||||||||||||  |||  ||| || |||| |||||||||||| | | |||||||||||||| |    
T  37218001 ttcaggacgggtttggggtatgagttcgggcttggtacttatatcccccgttacccgtcccgtacctgtgttttgaaataggataaaactcaaactcata 37218100  T
Q  119 cccaaacc 126  Q
    ||||||||    
T  37218101 cccaaacc 37218108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 45708953 - 45708874
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaac 107  Q
    ||||||| |||||| |||||||||| |||| ||||| ||| |||  ||| | ||||||||||||||| |||| |||||||    
T  45708953 cgggtttaggtatgagttcggggtgggtacctatatacccgttacccgtccaatacccgtgttttgagatcggagaaaac 45708874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 2630661 - 2630564
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||  ||||| ||| | |  ||| |||||||| |||||| ||||||  |||||| ||||| || |||||||||    
T  2630661 cgggtttgggtatgggttcggggtgggtatctatatacccgtcacccgtcccatacccatgtttt-aaatcggggaaaacccaaacccatacccaaacc 2630564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 45885845 - 45885755
Alignment:
Q  36 ggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||| |||| ||||| |   |||  ||| ||||||||||||||||| ||||  ||||||||| || || |||||||||    
T  45885845 ggtatgggttcggggtgggtacctatatacttgttacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacc 45885755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 16811739 - 16811823
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcag 117  Q
    |||||||||||||||||| || |||  ||||| |||||||| |||  |||||||||||||||| ||||  |||||  |||||||||    
T  16811739 tttgggtatgggttcggg-tgggtatctatatacccattatccgtctcatacccgtgttttgagatcggggaaaatccaaactcag 16811823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 24425385 - 24425470
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||||||  ||||| || ||||| |||| ||||| ||| |||  ||| |||||||||||||||||||||  |||||| ||||||    
T  24425385 cgggtttggaaatggggtcagggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcagagaaaattcaaac 24425470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 31426014 - 31426098
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||| ||||||||||  ||| ||||||||| |||  |||  ||||||||| |||| ||||||  |||||| |||||    
T  31426014 gggtttgggtatgcgttcggggtggatacatatatccccgttacccgtctcatacccgtatttttaaatcggggaaaacccaaac 31426098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 44845222 - 44845138
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||| |||||||||||||||| |||  ||||||| |||||  ||| || ||||||| || ||||||||  |||||| |||||    
T  44845222 gggtttgtgtatgggttcggggtgggtaaatatatcctcattaaccgtcccgtacccgtattatgaaatcggggaaaacccaaac 44845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 42707917 - 42707827
Alignment:
Q  35 gggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||| ||||||||||||| ||| |||  ||| |||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  42707917 gggtatgggttcggg-tgagtacttatattcccgttacccgtcccatacccgtgttttgaaatcggagaaaactcatactcatacccaaacc 42707827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 49250861 - 49250763
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||| ||||  ||| ||||| |||||||  ||| ||||||||||||||||| ||||  ||||||||| || || |||||||||    
T  49250861 cgggtttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacc 49250763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 16433251 - 16433170
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||||||   |||| |||||  || |||  ||| |||||||||||||||||||||| |||||||||||||    
T  16433251 gggtttgggtatgggttcgggg---gtacctatatatccgttacccgtcccatacccgtgttttgaaatcggagaaaactcaaac 16433170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 25154922 - 25154844
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||| |||||||||| ||| |||||  ||| |||||||||||||||||| |||| || ||| |||||||||||||||    
T  25154922 ttcaggacgggtttgggcatgagttcgaagtgggtacttatatccccattactcgtcccgtactcgtgttttgaaatcg 25154844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 28297935 - 28298017
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||||||    
T  28297935 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactca 28298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 29871373 - 29871271
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||||||||| |||| ||||| |||| ||||| ||  |||   || |||||||| ||||||||||||| ||||||| |||||||| |||||||| |    
T  29871373 cgggtttgggtatgagttcagggtgggtacctatataccagttacctgtcccatacccatgttttgaaatcggagaaaacccaaactcatacccaaactt 29871274  T
Q  128 agt 130  Q
    |||    
T  29871273 agt 29871271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 36187308 - 36187210
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||| ||||| |||| ||||| ||| |||  ||| ||||||||||||||||| ||||  |||||| || || || |||||||||    
T  36187308 cgggtttgggtatgggttcagggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacc 36187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 39219262 - 39219344
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||||||||||||||||||| |||| | ||||||| ||| | ||||| |||||||||||| ||||||  |||||| |||||    
T  39219262 gtttgggtatgggttcggggtgggtacatgtatccccgttacttgttccgtacccgtgttttaaaatcggggaaaacccaaac 39219344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 9982977 - 9982880
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||||| |||| ||||| | | |||  | | |||| ||||||||||||||| |  ||||| ||||||||| |||||||||    
T  9982977 gggtttgggtatgggttcggggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattggggaaaattcaaactcatacccaaacc 9982880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 23058468 - 23058565
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||||| |||| ||||||||| |||  |||  | ||| ||  ||||||||||| ||||||||||||| || || ||||||    
T  23058468 gggtttgggtatgggttcggggtgggtacctatatccccgttacccgtctcgtactcgcattttgaaatcggagaaaactcaaacccatactcaaacc 23058565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 10778655 - 10778547
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||| || ||||||||||||||||  ||  |||| |||| |||  ||| ||||||||||||||||||||||   |||||| ||||||| |||||||||     
T  10778655 cgggtatgagtatgggttcggggtggatatctataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaacttaaactcatacccaaaccc 10778556  T
Q  128 agttaaagc 136  Q
    ||| |||||    
T  10778555 agtcaaagc 10778547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 16237391 - 16237295
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||||||||||||| ||||| ||||||| | |||  ||| || ||||||| |||||||||||  |||||| |||| ||| | ||||||    
T  16237391 gggtttgggtatgggttcggggttagtacatatatcctcgttacccgtcccttacccgtattttgaaatcggggaaaacccaaattcatatccaaac 16237295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 34673368 - 34673264
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctag 129  Q
    ||||||||||||||||||||||| |||| ||||| ||| |||   ||  ||||||||||||||||||| |   ||||| ||||| || ||||||||| ||    
T  34673368 ggtttgggtatgggttcggggtgggtacctatatacccgttaccagtctcatacccgtgttttgaaattgggaaaaacccaaacccatacccaaacccag 34673269  T
Q  130 ttaaa 134  Q
    |||||    
T  34673268 ttaaa 34673264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 12495011 - 12495082
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||| |||| |||| ||||| ||| |||  ||| ||||| ||||||||||||||||    
T  12495011 cgggtttgggtatgggttcgaggtgggtacctatatacccgttacacgtcccatatccgtgttttgaaatcg 12495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 24236849 - 24236778
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||| |||||||||||||||| |||| ||||| ||| ||   ||||||||||||||||||||| ||||    
T  24236849 cgggtttgagtatgggttcggggtgggtacctatatacccgttccccgttccatacccgtgttttgagatcg 24236778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 29936417 - 29936488
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||| |||||| ||||    
T  29936417 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgagatcg 29936488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 33293588 - 33293521
Alignment:
Q  59 tatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||  ||| ||||||||||||||||||||||   ||||| |||||||| |||||||||    
T  33293588 tatatccccattacccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacc 33293521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 34060106 - 34060031
Alignment:
Q  35 gggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    |||||||||||||| ||| |||| ||||| ||  |||| |||  |||||||||||||||||||||| |||||||||    
T  34060106 gggtatgggttcggagtgggtacctatatacctgttatccgtctcatacccgtgttttgaaatcgaggaaaactca 34060031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 34611074 - 34611145
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||||||||||| ||||| | | |||   || ||||||||||||||||| ||||    
T  34611074 cgggtttgggtatgggttcggggtgagtacctatatacacgttacatgtcccatacccgtgttttgagatcg 34611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 50426742 - 50426679
Alignment:
Q  35 gggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    |||||||||||||||||| |||| ||||| ||| |||| |||  ||||||||||||||||||||    
T  50426742 gggtatgggttcggggtgggtacctatatacccgttatccgtctcatacccgtgttttgaaatc 50426679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 17134954 - 17135088
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaa 133  Q
    |||||||||||||||||   |||| ||||| ||| |||  |||  |||||||||||||||||||||  |||||| || || || ||||||||| ||| ||    
T  17134954 tgggtatgggttcggggatggtacctatatacccgttacccgtctcatacccgtgttttgaaatcggggaaaacccatacccacacccaaacccagtcaa 17135053  T
Q  134 agcaaagaaaatctgtaaatttaagtttggttcgg 168  Q
    | || |||||||| || || ||  |||||||||||    
T  17135054 aacagagaaaatccgtcaaattgggtttggttcgg 17135088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 23490859 - 23490761
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||| ||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||||    
T  23490859 cgggttttggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacc 23490761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 42439755 - 42439661
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||| ||||||||||||||| |||| ||||| ||| ||| |||| |||||||| |||||||| |||| | |||| ||| || || ||||||||    
T  42439755 gtttggatatgggttcggggtgggtacctatatacccgttactcgtcccatacccatgttttgagatcggaaaaaattcatacccatacccaaac 42439661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 44615563 - 44615465
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||| ||| |||||| |||| ||||| ||  |||  ||| ||||||||||||||| |||||   |||||| |||||||| |||||||||    
T  44615563 cgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacc 44615465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 44793006 - 44793104
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||| ||| |||||| |||| ||||| ||  |||  ||| ||||||||||||||| |||||   |||||| |||||||| |||||||||    
T  44793006 cgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacc 44793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 19572600 - 19572427
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||| || |||||||||||||||| |||| ||||| ||| |||   || ||||||||||||||||||||||   ||||| || || || |||||||||     
T  19572600 cgggtatgagtatgggttcggggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaaccc 19572501  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcggacaggtacccacaagtatggactgtgttgccat 201  Q
    ||| |||     ||||| | || || ||| ||||||||||| | |||| ||||||||||||  | |||||||||    
T  19572500 agtcaaaatggggaaaacccgtcaaattaggtttggttcgggcgggtaaccacaagtatgggttttgttgccat 19572427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 41477049 - 41476952
Alignment:
Q  19 ctttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||| || ||||||||||||||| ||||||||| |||| ||||||| | |||| ||| || ||| ||| ||||  ||||||| ||||| ||||||||    
T  41477049 ctttcgggacgggtttgggtatggattcggggtgggtacatatatccacgttatccgtcccgtactcgtattttccaatcgaaaaaaacccaaactca 41476952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 16903524 - 16903567
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccatta 71  Q
    |||||||||||||| |||||||||| |||| |||||||||||||    
T  16903524 cgggtttgggtatgagttcggggtgggtacctatatccccatta 16903567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 51421859 - 51421930
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| |   |||  ||| ||||||||||||||||| ||||    
T  51421859 cgggtttgggtatgggttcggggtgggtacatatatacatgttacccgtcccatacccgtgttttgagatcg 51421930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 3628064 - 3628002
Alignment:
Q  37 gtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||| |||| || || ||| |||  ||| ||||||||||||||||||||||    
T  3628064 gtatgggttcggggtgggtacctacatacccgttacccgtcccatacccgtgttttgaaatcg 3628002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 34085242 - 34085324
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||||||||||||||| |||| |||| |||| |||  | | |||||| |||||||||||||||   ||||| ||||||||    
T  34085242 tgggtatgggttcggggtgggtacatataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaacccaaactca 34085324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 5283681 - 5283592
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcag 117  Q
    ||||||| |||||| ||||| |||| |||||| |||||||||||  ||| || ||| | |||||||| ||| ||||| || |||||||||    
T  5283681 cgggtttaggtatgagttcgaggtgggtacttctatccccattacccgtcccgtactcatgttttgagatcaaagaatacccaaactcag 5283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 17092047 - 17091950
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||| |||| ||||||||||||||||| | ||||| ||| |||  ||| ||||||| ||||| | ||||||  ||||||||| ||||| | ||||||    
T  17092047 cgggtatgggcatgggttcggggtgagtgcctatatacccgttacgcgtcccatacctgtgttataaaatcggggaaaactcatactcatatccaaac 17091950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 18354162 - 18354097
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||| ||||||||||| | |||||||| ||| |||  ||| |||||||| |||||||||||||    
T  18354162 tgggtatcggttcggggtgggaacttatatacccgttacccgtcccatacccatgttttgaaatcg 18354097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 19003741 - 19003652
Alignment:
Q  41 gggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    ||||| ||||||  ||| ||||||||| |||| ||| |||||||||| ||||| |||||  |||||| | ||| || |||||||||||||    
T  19003741 gggtttggggtggatacatatatccccgttatccgtcccatacccgtattttgtaatcggggaaaacccgaacccatacccaaacctagt 19003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 45866272 - 45866171
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaaccta 128  Q
    |||| |||||||| ||| |||||| |||| ||||| | |||||   ||  |||||||||||||||||||||  |||||| || || || |||||||||||    
T  45866272 gggtatgggtatgagtttggggtgggtacctatatactcattacctgtctcatacccgtgttttgaaatcggggaaaacccatacccatacccaaaccta 45866173  T
Q  129 gt 130  Q
    ||    
T  45866172 gt 45866171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 2367326 - 2367428
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||  ||| ||||||||||||||||| ||||  |||||| || || || ||||||||||    
T  2367326 cgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacct 2367425  T
Q  128 agt 130  Q
    |||    
T  2367426 agt 2367428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 14410951 - 14410858
Alignment:
Q  20 tttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||||||||||   ||||||||||||    
T  14410951 tttcaggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatctgggaaaactcaaac 14410858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 20349068 - 20349161
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||| |||||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||  |||||  |||||||| ||| ||||    
T  20349068 tttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcataccaaaac 20349161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 256579 - 256483
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||||||| |||||| |||| ||||| |||||||  |||  | ||||| |||||||||||||  ||||||||||||||| ||||||||    
T  256579 gggtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcggggaaaactcaaactcatacccaaac 256483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 12678182 - 12678084
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||| ||||| |||| ||||| ||| |||  ||| ||||||| |||| |||||||||  |||||| |||||||| |||||||||    
T  12678182 cgggtttgggtatgggttcagggtgggtacctatataccctttacccgtcccatacctgtgtcttgaaatcggggaaaacgcaaactcatacccaaacc 12678084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 32532540 - 32532638
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| || |||||||||||||||| |||| ||||| |||||||  ||| ||||||||||||||||||||||  |||||| || ||||| || ||||||    
T  32532540 cgggtatgagtatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcggggaaaacccatactcatactcaaacc 32532638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 28079780 - 28079687
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||||||||||| |||| ||||||||| |||  ||| || ||||| |||||||||||||  |||||| ||||| || ||||||||    
T  28079780 tttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaaacccaaacccatacccaaac 28079687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 32853844 - 32853915
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||||| ||||    
T  32853844 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcg 32853915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 5863471 - 5863373
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||| |||| |||  ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| || || || |||||||||    
T  5863471 cgggtttgggtatgggttcgaggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacc 5863373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 12309572 - 12309642
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    ||||||||||||| ||||||||||| |||| ||||| ||  |||  |||||||||||||||||||||||||    
T  12309572 cgggtttgggtatcggttcggggtgggtacatatatacctgttacccgttccatacccgtgttttgaaatc 12309642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 27534684 - 27534782
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||| ||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  ||||||||| || || |||||||||    
T  27534684 cgggtttgggtatggattcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactcatacccatacccaaacc 27534782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 5109016 - 5108911
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    ||||||||||| |||||||||| |||||||||||||  | |||| | |||||| | |||||||||||||   ||||||||||| || ||| ||||| |||    
T  5109016 gtttgggtatgagttcggggtgggtacttatatccctgtcattcatcccatacacatgttttgaaatcgggaaaaactcaaacccataccgaaacccagt 5108917  T
Q  131 taaagc 136  Q
     |||||    
T  5108916 aaaagc 5108911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 27738772 - 27738843
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| |||||  |  |||  ||| ||||||||||||||||||||||    
T  27738772 cgggtttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcg 27738843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 3484011 - 3483913
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  | | |||||||||||||| || ||||  |||||| || || || |||||||||    
T  3484011 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccatcccatacccgtgtttcgagatcggggaaaacccatacacatacccaaacc 3483913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 14254962 - 14255078
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagtt 131  Q
    |||||||||||||||  |||| |||| |||||  || |||  ||| |||||||||||||| ||||||  ||||||||||||| || ||||||||| |||     
T  14254962 tttgggtatgggttcatggtgggtacctatatttccgttacacgtcccatacccgtgttt-gaaatcagagaaaactcaaacccatacccaaacccagtc 14255060  T
Q  132 aaagcaaagaaaatctgt 149  Q
    ||| | | ||||||||||    
T  14255061 aaaacgaggaaaatctgt 14255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 32959868 - 32959929
Alignment:
Q  36 ggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaat 97  Q
    |||||||||||||||||  ||| ||||||||| |||  |||||| |||||||||||||||||    
T  32959868 ggtatgggttcggggtggatacctatatccccgttacccgttccgtacccgtgttttgaaat 32959929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 15498324 - 15498395
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||| |||||||||| || |||| ||||| |||||||   ||  |||||||||||||||||||||    
T  15498324 cgggtttgggtgtgggttcgggatgggtacctatatacccattacctgtctcatacccgtgttttgaaatcg 15498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 24225698 - 24225769
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||| |||||||||||||| |||| ||||| ||| |||  ||| ||||| ||||||||||| ||||    
T  24225698 cgggtttgggcatgggttcggggtgggtacctatatacccgttacccgtcccatatccgtgttttgagatcg 24225769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 32053088 - 32053159
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||| |||||| |||| ||||| ||| |||  ||| ||||| || |||||||||||||    
T  32053088 cgggtttgggtatgggtttggggtgggtacatatatacccgttacccgtcccatatccatgttttgaaatcg 32053159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 12141385 - 12141451
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttga 94  Q
    ||||||||||||||||||||||||| |||| ||||| ||| | |  ||| ||||| |||||||||||    
T  12141385 cgggtttgggtatgggttcggggtgggtacctatatacccgtcacccgtcccatatccgtgttttga 12141451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 21875684 - 21875587
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaagcaaagaaaatctgtaaatttaagtttggttcggacaggtaccc 178  Q
    |||||||||| | |||| | ||||||||||||| || ||| ||||| ||| ||  | ||||||| |||| || |||||||||||| |||| |||||||    
T  21875684 tacccgtgttataaaattggagaaaactcaaacccaaaccaaaacccagtcaatacgaagaaaacctgtcaaattaagtttggtttggacgggtaccc 21875587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 7393972 - 7393904
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||| ||||||||||||||||  ||| ||||| |||||||| |||  | ||| |||||||||||||||    
T  7393972 gtttgagtatgggttcggggtggatacctatatacccattatccgtctcttactcgtgttttgaaatcg 7393904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 10142604 - 10142508
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||| |||||||||| |||| ||||| ||| |||   || |||||||||| |||||| ||||  |||||| || || || |||||||||    
T  10142604 ggtttgggtatgagttcggggtgggtacctatatacccgttacctgtcccatacccgttttttgagatcggggaaaacccatacccatacccaaacc 10142508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 18908894 - 18908990
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    ||||||||||||| ||| |||||| |||| |||||||   |||  ||| ||||| |||| |||||||||||  |||||| |||||||| || |||||    
T  18908894 gggtttgggtatgagtttggggtgggtacatatatccttgttacccgtcccatatccgtattttgaaatcggggaaaacccaaactcatactcaaac 18908990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 26564837 - 26564955
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||||| ||||||||| |||| ||||| ||| |||  ||| ||||||||| ||||||||||||  |||| |||||||||| |||||||||     
T  26564837 cgggtttgggtatggtttcggggtgggtacctatatacccgttacccgtcccatacccgcgttttgaaatcggggaaagctcaaactcatacccaaaccc 26564936  T
Q  128 agttaaagcaaagaaaatc 146  Q
    ||| ||| | |||||||||    
T  26564937 agtcaaaacgaagaaaatc 26564955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 4741305 - 4741208
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||  |||||||||||||||| |||||||||||||  |||| ||| |||||||| |||||| ||||||| ||||||||||||||| | ||||||    
T  4741305 cgggtttttgtatgggttcggggtgggtacttatatccctgttatccgtcccatacccatgttttaaaatcgaggaaaactcaaactcatatccaaac 4741208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 6382361 - 6382253
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||||| |||| ||||||| || || || |||||||||     
T  6382361 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaaacccatacccatacccaaaccc 6382262  T
Q  128 agttaaagc 136  Q
    ||| |||||    
T  6382261 agtcaaagc 6382253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 6482124 - 6481984
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||||||||||||||||||| |||| ||||| ||| ||| |||| ||||||||||||||| |||| |  |||||| ||||| || |||||||||     
T  6482124 cgggtttgggtatgggttcggggtgggtacatatataccctttactcgtcccatacccgtgtttttaaattggggaaaacccaaacccatacccaaaccc 6482025  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcgg 168  Q
    | | ||| || |||||||| || || || |||||| |||||    
T  6482024 aatcaaaacagagaaaatccgtcaaattgagtttgattcgg 6481984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 42907895 - 42907998
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    ||||||||||||| |||||||| |||| ||||||||||||| |||| || || |||||||||||| ||| |||||||||| | ||| ||||||| | |||    
T  42907895 gtttgggtatgggctcggggtgggtacctatatccccattactcgtcccgtatccgtgttttgaattcggagaaaactcataatcatacccaaatccagt 42907994  T
Q  131 taaa 134  Q
    ||||    
T  42907995 taaa 42907998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 31918647 - 31918549
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||| |||| |||||||||||||| || ||||  |||||| || ||||| |||||||||    
T  31918647 cgggtttgggtatgggttcggggtgggtaactatatacccattactcgtcccatacccgtgtttcgagatcggggaaaacccatactcatacccaaacc 31918549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 21956900 - 21956807
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaa 124  Q
    |||||||||||||||||||||| | || ||||||||| ||| || |||| |||||||||||| |||||| | ||||| |||||||| |||||||    
T  21956900 gtttgggtatgggttcggggtgggcacctatatccccgttactcattccgtacccgtgttttaaaatcggaaaaaacccaaactcatacccaaa 21956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 14606011 - 14605917
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||||||||||| |||| ||||||||  |||  |||  | ||||||| ||||||||||| ||||||| ||||| || ||||||||    
T  14606011 gtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaac 14605917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 21544586 - 21544656
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||||| |||| |||||||||||||   || || ||||||| |||||||||||    
T  21544586 gggtttgggtatgggttcggggtgggtacatatatccccattacctgtcccgtacccgtattttgaaatcg 21544656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 30672970 - 30673065
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||| |||||| ||||  ||| |||||||||||||| ||| || ||||||| |||| |||||| ||||||  |||||||| |||||||||    
T  30672970 gggtttgggtataggttcgaggtg--tacatatatccccattatccgtcccgtacccgtattttaaaatcggagaaaatccaaactcatacccaaacc 30673065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 32585495 - 32585573
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaa 106  Q
    ||||||||||||||||||| ||||| |||| ||||| ||| |||   || |||||||||||||||||||||| ||||||    
T  32585495 cgggtttgggtatgggttcagggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcggagaaaa 32585573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 44317541 - 44317639
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||||    
T  44317541 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacc 44317639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 47550442 - 47550360
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    ||||||||||||||||||||||||| |||| ||||| ||  |||  ||| ||||||||||||||||| ||||  |||||||||    
T  47550442 cgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaactca 47550360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 1724399 - 1724314
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||||||||| |||| |||||  || |||  ||| |||||||| |||||||||||||  |||||| |||||    
T  1724399 cgggtttgggtatgggttcggggtgggtacctatataaccgttacccgtcccatacccatgttttgaaatcggggaaaacccaaac 1724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 11122958 - 11122861
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||| |||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || |||| ||||||| || || || ||||||||    
T  11122958 cgggtttgagtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggagaaaacccatacccatacccaaac 11122861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 7608976 - 7609072
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaa 124  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||    
T  7608976 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaa 7609072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 29527819 - 29527903
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||||||||||||||||||||| |||| ||||||||| |||  |||  | ||||||| |||||||||||  |||||| |||||    
T  29527819 gggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaacccaaac 29527903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 5902703 - 5902640
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||    
T  5902703 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttt 5902640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 12825548 - 12825461
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcag 117  Q
    ||||||||||| ||||| ||||| |||| |||||  || |||  ||| ||||||||||||||||||||||  |||||| |||||||||    
T  12825548 ggtttgggtataggttcagggtgggtacgtatatatccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaactcag 12825461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 11028081 - 11028175
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaa 124  Q
    |||||||||||| |||||||||| |||| ||||| ||| |||  ||| ||||||||||||||||| ||||  |||||| || || || |||||||    
T  11028081 ggtttgggtatgagttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaa 11028175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 15987351 - 15987253
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||  ||||| ||| |||  | | ||||||||||||||| |||||   ||||||||| || || |||||||||    
T  15987351 cgggtttgggtatgggttcggggtgggtatctatatacccgttacccatcccatacccgtgttttaaaatctgggaaaactcatacccatacccaaacc 15987253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 45065256 - 45065334
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaac 107  Q
    ||||||||||||| ||||||| || |||| ||||||||  ||| |||| || ||||||| |||||||||||| ||||||    
T  45065256 gggtttgggtatgcgttcgggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatcgaggaaaac 45065334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 48459488 - 48459558
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||| ||||||||||||||||||| |||| ||||| ||  |||  |||||||||||| |||||||||||||    
T  48459488 gggtatgggtatgggttcggggtgggtacctatatacctgttacccgttccatacccatgttttgaaatcg 48459558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 568425 - 568466
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccatta 71  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  568425 ggtttgggtatgggttcggggtgggtacatatatccccatta 568466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 37349171 - 37349216
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||    
T  37349171 tacccgtgttttgaaatcggggaaaactcaaactcatacccaaacc 37349216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 55826712 - 55826539
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    ||||||||| ||||||||||||||| |||| ||||| ||| |||  ||| ||||||| |||||| || ||||  |||||| || ||||| | |||||||     
T  55826712 cgggtttggatatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgtttcgagatcggggaaaacccatactcatatccaaaccc 55826613  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcggacaggtacccacaagtatggactgtgttgccat 201  Q
    ||| ||| ||  ||||||| || || ||   |||||||||||| |||| ||||  ||||||  | |||||||||    
T  55826612 agtcaaaacagggaaaatccgtcaaattggatttggttcggacgggtaaccacgggtatgggttttgttgccat 55826539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 1866635 - 1866536
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    ||||||||||||||||||||||  ||| ||||||| |||||  |||  | ||||||| |||||||||||   ||||| || ||||| ||||| |||||||    
T  1866635 gtttgggtatgggttcggggtggatacatatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaacccatactcatacccagacctagt 1866536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 31752462 - 31752533
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||| ||||||||||||||||||| | || ||||| | | ||| ||||  |||||||||||||||||||||    
T  31752462 cgggtatgggtatgggttcggggtgggaacctatatactcgttactcgtctcatacccgtgttttgaaatcg 31752533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12505626 - 12505576
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccatta 71  Q
    |||||| |||||||||||||| |||| ||||| ||||| ||||||||||||    
T  12505626 ttcaggacgggtttgggtatgagttcagggtgggtactaatatccccatta 12505576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 25298922 - 25298852
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    |||||||||||||||||||||||||   |  |||||||||||||  | | || ||||||||||||||||||    
T  25298922 cgggtttgggtatgggttcggggtggacagctatatccccattacccatcccgtacccgtgttttgaaatc 25298852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 33516161 - 33516123
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccc 66  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  33516161 cgggtttgggtataggttcggggtgggtacttatatccc 33516123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 36919132 - 36919270
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    |||||||||||||||  || ||  ||| ||||||| | ||| |||| | |||| | |||||| || |||  ||||||||||||||| ||||||||| |||    
T  36919132 gtttgggtatgggttaaggatggatacctatatccacgttactcgtcctatacacatgttttaaagtcggggaaaactcaaactcatacccaaacccagt 36919231  T
Q  131 taaagcaaagaaaatctgtaaatttaagtttggttcgga 169  Q
    |||||| |  |||| | || || || |||||||||||||    
T  36919232 taaagcgagaaaaacccgtcaaattgagtttggttcgga 36919270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 39665795 - 39665897
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||| |||||| ||| ||||| | || |||||||   |||| |||  |||||| || ||| ||||||| |||||||||||| ||| ||||||||||    
T  39665795 cgggtttgagtatggtttcagggtgggaacctatatccttgttatgcgtctcatacctgtatttcgaaatcggagaaaactcaaattcatacccaaacct 39665894  T
Q  128 agt 130  Q
    |||    
T  39665895 agt 39665897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 12075667 - 12075622
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||| | | |||||||||||||| |||||||||    
T  12075667 tacccgtgttttgaaattggaaaaaactcaaactcatacccaaacc 12075622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 16575121 - 16575206
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    |||||||||| ||||||| ||| |||||||||||| | |||| | | || |||||| ||||| ||||||| ||| || ||||||||    
T  16575121 gtttgggtataggttcggagtgggtacttatatcctcgttatccatcccgtacccgcgttttaaaatcgaggaatacccaaactca 16575206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 31416019 - 31415942
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaa 106  Q
    ||||||| || ||||||||||||| |||| ||||||||  |||| | | || ||||||| ||||||||||| ||||||    
T  31416019 gggtttgagtgtgggttcggggtgggtacatatatccctgttatccatcccgtacccgtattttgaaatcggagaaaa 31415942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 10302096 - 10302188
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||| |||| |||| |||| |||  |||  |||||||||  ||||||||||  ||||||  |||| || |||||||||    
T  10302096 tgggtatgggttcggggtgggtacatataaccccgttacccgtctcatacccgtactttgaaatcggggaaaacctaaacccatacccaaacc 10302188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 12505577 - 12505489
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagaccc-aaacctagttaaagcaaagaaaatctgtaaatttaagtttggttcgg 168  Q
    |||||||||||||||||||  |||||| |||||||| |||| ||||| | | |||||  |||||| | || ||||||| ||||||||||    
T  12505577 tacccgtgttttgaaatcggggaaaacccaaactcataccctaaacccaatcaaagcggagaaaacccgtcaatttaaatttggttcgg 12505489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 25941147 - 25941215
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||||||||||| |||| ||| | ||| |||   || || |||||||||||||||||||    
T  25941147 gtttgggtatgggttcggggtgggtacctatcttcccgttacctgtcccgtacccgtgttttgaaatcg 25941215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 47103745 - 47103781
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatcc 65  Q
    |||||||||||||||||||||||| |||| |||||||    
T  47103745 gggtttgggtatgggttcggggtgggtacatatatcc 47103781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 45256824 - 45256912
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||  |||  |||||||||||||||||||||  ||||||||| |||||    
T  45256824 cgggtttaggtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggggaaaactcatactca 45256912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 35248480 - 35248388
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||| ||||||||||||||||||||||||| |||| | ||||||| |||  ||| |||||||||||||||| |||||  |||||| |||||    
T  35248480 ttcaggacgggtttgggtatgggttcggggtgggtacctttatcccctttacccgtcccatacccgtgttttgtaatcgtggaaaacccaaac 35248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 17845479 - 17845394
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||  ||||| ||||||||||  ||||||   ||  ||||| |||||||||||||||||||||||||||||    
T  17845479 cgggtttgggtatgggttaagggtgggtacttatatgtccattaccggtctcatactcgtgttttgaaatcgaagaaaactcaaac 17845394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 35965336 - 35965420
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||||||||||| ||| |||| | |||||||||||  | | ||||||||||||||||||||||  ||||||||||||    
T  35965336 cgggtttgggtatgggttcggagtgggtacatgtatccccattacacat-ccatacccgtgttttgaaatcggggaaaactcaaac 35965420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 13830739 - 13830834
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||| |||||||||||||||| |||||||||| ||| |||  ||| ||||||||||||||||| ||||| |||||| || || || |||||||||    
T  13830739 ggtttgagtatgggttcggggtgggtacttatatacccgtta-ccgtcccatacccgtgttttgagatcgaggaaaacccatacccatacccaaacc 13830834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 30846947 - 30847045
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||||    
T  30846947 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacc 30847045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 36128194 - 36128052
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||  | | |||||||||||||| || ||||  |||| | || || || |||||||||     
T  36128194 cgggtttgggtatgggttcggggtgagtacctatatacccgttacccatcccatacccgtgtttcgagatcggggaaaccacatacccatacccaaaccc 36128095  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttcggac 170  Q
    ||| ||| |   ||||||| || || ||| |||||||||||||    
T  36128094 agtcaaaacggggaaaatccgtcaaattaggtttggttcggac 36128052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 38342606 - 38342509
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||||| |||| ||||||||| |||  ||| || || |||| |||| ||||||  |||||||||||| || | |||||||    
T  38342606 gggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcccgtatccgtattttaaaatcggggaaaactcaaacccatatccaaacc 38342509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 9632387 - 9632450
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    |||||||||||||||||||||||||  ||| ||||| |||||||  ||| ||||||||||||||    
T  9632387 cgggtttgggtatgggttcggggtggatacctatatacccattacccgtcccatacccgtgttt 9632450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 22900795 - 22900866
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||| |||||||| |||||||||| |||  |||| |||| ||| |||| ||||||||||||||||||||||    
T  22900795 cgggtatgggtatgagttcggggtgggtatatataaccccgttactcgtcccatacccgtgttttgaaatcg 22900866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 24414220 - 24414149
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| ||  |||  ||| ||||||||||||||||| ||||    
T  24414220 cgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcg 24414149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 37999484 - 37999555
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||||||||| |||||||||| |||||||||| ||| |||  |||  |||||||||||||||| ||||    
T  37999484 cgggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcg 37999555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 13705449 - 13705367
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    ||||||| ||||||||||||||||| |||| ||||| ||| |||   ||  |||||||||||||||||||||  |||||||||    
T  13705449 cgggtttaggtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcggggaaaactca 13705367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 37106700 - 37106790
Alignment:
Q  35 gggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||| ||| |||| ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| || || || ||||||||    
T  37106700 gggtatgggttcggagtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaac 37106790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 8916025 - 8915953
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcga 100  Q
    |||||||| |||||||||||||||| |||| ||||| ||  |||  ||| ||||||||||||||||| |||||    
T  8916025 cgggtttgagtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcga 8915953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 26755767 - 26755839
Alignment:
Q  54 gtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||| ||||||||| ||| |||| | |||||| | |||| |||||||||||||| |||||||| |||||||||    
T  26755767 gtacatatatccccgttaatcgtccgatacccatattttaaaatcgaagaaaacccaaactcatacccaaacc 26755839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 43371555 - 43371639
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    ||||||||||||| ||| |||||| |||| ||||||||| |||  ||| || ||||||| |||| ||||||  ||||||||||||    
T  43371555 gggtttgggtatgagtttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaactcaaac 43371639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 3179546 - 3179589
Alignment:
Q  54 gtacttatatccccattattcgttccatacccgtgttttgaaat 97  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  3179546 gtacttatatcctcattactcgttccatacccgtgttttaaaat 3179589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 42798074 - 42798011
Alignment:
Q  30 ggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttg 93  Q
    |||||| |||||||||||||||| |||||||||| ||| |||  |||  |||||||||||||||    
T  42798074 ggtttgtgtatgggttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttg 42798011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 3547168 - 3547238
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    |||||||| ||||||||||||||| |||| |||||| || |||  ||| || ||||||| |||||||||||    
T  3547168 gggtttggatatgggttcggggtgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcg 3547238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 44057884 - 44057954
Alignment:
Q  29 gggtttgggtatgggttc-ggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatc 98  Q
    |||||||||||||||||| |||||| |||| |||||||||||||  ||| || |||| || ||||||||||    
T  44057884 gggtttgggtatgggttcgggggtgggtacatatatccccattacccgtcccgtaccggtattttgaaatc 44057954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 34320627 - 34320711
Alignment:
Q  31 gtttgggtatgggttcggggtgagta--cttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaac 113  Q
    |||||||||||| ||||||| | |||  ||||||||||| ||| || |  |||||| ||||||| ||||||| ||||||||||||    
T  34320627 gtttgggtatggattcggggagggtatacttatatccccgttagtcatctcatacctgtgttttaaaatcgaggaaaactcaaac 34320711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 14331529 - 14331597
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaat 97  Q
    |||||||||||||||||||| ||| |||| ||||||||| |||  ||| ||||||| || |||| ||||    
T  14331529 gggtttgggtatgggttcggagtgggtacatatatccccgttacccgtcccatacctgtatttttaaat 14331597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 30978929 - 30979014
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactca 116  Q
    ||||||||||||||||||||||||  ||| ||||||| | |||| |  ||| ||||||| |||||||||||   ||||| ||||||||    
T  30978929 gggtttgggtatgggttcggggtggatacatatatcctcgttatcc--tccgtacccgtattttgaaatcgggaaaaacccaaactca 30979014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 45115569 - 45115641
Alignment:
Q  38 tatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    |||||||||||| || |||| ||||| ||  |||  |||  |||||||||||||||||||||| |||||||||    
T  45115569 tatgggttcgggatgggtacctatatacctgttacccgtctcatacccgtgttttgaaatcgaggaaaactca 45115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 33396 - 33491
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| ||||| || |||||||||    
T  33396 gtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccatacccaaacc 33491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 4016129 - 4016030
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagt 130  Q
    |||||||||||||||||| ||| |||| ||||| ||| |||| ||| |||||||| |||||||||||||  |||||| ||||| || |||||||||||||    
T  4016129 gtttgggtatgggttcggagtgggtacctatatacccgttatccgtcccatacccatgttttgaaatcggggaaaacccaaacccatacccaaacctagt 4016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 44172626 - 44172697
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||  ||| ||||||||||||||||| ||||    
T  44172626 cgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcg 44172697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 44179326 - 44179397
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||  ||| ||||||||||||||||| ||||    
T  44179326 cgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcg 44179397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 4553190 - 4553328
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||| |||||||||||||||| ||| ||||||||| ||||  ||||||  |||| |||||||||||||   ||||||||||| || ||| || ||     
T  4553190 cgggtttgagtatgggttcggggtgtgtatttatatccctattacccgttccgcacccatgttttgaaatcgggaaaaactcaaacgcatacctaagccc 4553289  T
Q  128 agttaaagcaaagaaaatctgtaaatttaagtttggttc 166  Q
    ||| |||||  |||||| |  ||||||| ||||||||||    
T  4553290 agtcaaagcggagaaaacccataaatttcagtttggttc 4553328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 19111734 - 19111832
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||| |||||||  ||||| |||||||||| ||| |||| | | || |||||||||||||||||||   |||||||||||||| |||||||||    
T  19111734 cgggtttgggcatgggtttagggtgggtacttatatacccgttatccatcccgtacccgtgttttgaaatcgggaaaaactcaaactcatacccaaacc 19111832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 34119660 - 34119754
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||| |||| ||||| ||  |||| |||  |||||||||||||| ||||||   |||||||||||||| |||||||||    
T  34119660 tttgggtatgggttcggggtgggtacctatatacctgttatccgtctcatacccgtgttttaaaatcgggaaaaactcaaactcatacccaaacc 34119754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 39728671 - 39728769
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||  | | |||||||||| |||||| ||||| ||||||  | ||||| |||||||||    
T  39728671 cgggtttgggtatgggttcggggtgggtacttatatacccgttacccatcccatacccgtattttgagatcgaggaaaacctatactcatacccaaacc 39728769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 42758374 - 42758480
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacct 127  Q
    |||||||||||||||||||||||||  ||| ||||| ||  |||  ||| ||||||| ||||||||||||||  | |||| |||||||| |||||||||     
T  42758374 cgggtttgggtatgggttcggggtgcatacctatatacctgttacccgtcccatacctgtgttttgaaatcgggggaaacccaaactcatacccaaaccc 42758473  T
Q  128 agttaaa 134  Q
    |||||||    
T  42758474 agttaaa 42758480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 48305729 - 48305647
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactca 110  Q
    ||||||||||||| ||||||||||| |||| ||||| |||  || ||||||||||||||||||||||||| |  |||||||||    
T  48305729 cgggtttgggtataggttcggggtgggtacctatatacccgatactcgttccatacccgtgttttgaaattggggaaaactca 48305647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 44639274 - 44639340
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttga 94  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| |||||||||||||||||    
T  44639274 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttga 44639340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 44953523 - 44953425
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||| ||||| ||||||||||||||| ||||| ||| |||  ||| ||||||||||||||||| ||||  |||||| || || || |||||||||    
T  44953523 cgggtttgagtatgagttcggggtgagtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccaaacccaaacc 44953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 52198155 - 52198226
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcg 99  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||| ||||||||| ||||    
T  52198155 cgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgttttgagatcg 52198226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 4557389 - 4557295
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||| |||| ||||| | | |||  ||| |||||||| |||||||||| ||  |||||| ||||| || |||||||||    
T  4557389 tttgggtatgggttcggggtgggtacctatatactcgttacccgtcccatacccatgttttgaaaacggggaaaacccaaacccatacccaaacc 4557295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 30904899 - 30904806
Alignment:
Q  32 tttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||| |||| |||||||||  ||  ||| || ||||||||||||||||||  | ||||  |||||||| |||||||||    
T  30904899 tttgggtatgggttcggggtgggtacctatatcccc-gtacccgtcccgtacccgtgttttgaaatcagaaaaaagccaaactcatacccaaacc 30904806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 39655361 - 39655263
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||| |||||| |||| ||||| ||  |||  ||| ||||||||||||||||| ||||  |||||| || || || |||||||||    
T  39655361 cgggtttgggtatgggtttggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacc 39655263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 44252747 - 44252845
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||||||||||||| |||| ||||| ||  |||  ||| |||||||||||||| || ||||  |||||| || || || |||||||||    
T  44252747 cgggtttgggtatgggttcggggtgggtacctatatacctgttacacgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacc 44252845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 48390905 - 48390807
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||| ||||||||||||| || || |||| ||||| ||| |||  ||| ||||||||||||||||||||||  |||||| || || || |||||||||    
T  48390905 cgggtatgggtatgggttcaggatgggtacctatattcccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacc 48390807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 52572609 - 52572707
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||| ||| |||||| ||||||||| || | ||||| ||| |||  ||| ||||||||||||||||| ||||| ||||||||| || || |||||||||    
T  52572609 cgggcttgagtatggattcggggtgggtccctatatacccgttacccgtcccatacccgtgttttgagatcgaggaaaactcatacccatacccaaacc 52572707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 54317144 - 54317242
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||| |||||||||||||| |||| ||||| ||| |||  ||| | ||||  ||||||||||||||  |||||||||||| || || ||||||    
T  54317144 cgggtttgggaatgggttcggggtgggtacctatatacccgttacccgtcctatacttgtgttttgaaatcggggaaaactcaaacacatactcaaacc 54317242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 23910289 - 23910180
Alignment:
Q  79 catacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaagcaaagaaaatctgtaaatttaagtttggttcggacaggtaccc 178  Q
    |||| ||||||||||||||||| ||||||||||||||| || |||||| ||| ||| |  | |||||| || || || | || | |||||||||||| ||    
T  23910289 catatccgtgttttgaaatcgaggaaaactcaaactcatacacaaacccagtcaaaacggaaaaaatccgtcaaattgaattcgattcggacaggtaacc 23910190  T
Q  179 acaagtatgg 188  Q
    || |||||||    
T  23910189 acgagtatgg 23910180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 23547027 - 23546967
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    |||||||||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||    
T  23547027 gtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttt 23546967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 23580833 - 23580925
Alignment:
Q  34 tgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||||||||||| ||| |||| ||||| ||| |||  |||| ||||| ||||||||||||| |  ||||||||| || || |||||||||    
T  23580833 tgggtatgggttcggagtgggtacctatatacccgttacccgtttcatactcgtgttttgaaattggggaaaactcatacccatacccaaacc 23580925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 1772486 - 1772403
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaa 112  Q
    ||||||| ||||| |||||||||| |||| ||||||| ||||| |||  |  ||||||| |||| |||||||||||||| ||||    
T  1772486 gggtttgtgtatgagttcggggtgggtacatatatccgcattactcgccctgtacccgtattttaaaatcgaagaaaacccaaa 1772403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 7469866 - 7469803
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    |||||||| |||||||||||||||| |||| ||||| ||| |||  ||| ||||||||||||||    
T  7469866 cgggtttgtgtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttt 7469803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 29284336 - 29284399
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttt 91  Q
    |||||||||||||||||||||| || |||| ||||| ||| |||  ||| ||||||||||||||    
T  29284336 cgggtttgggtatgggttcgggctgggtacctatatacccgttacccgtcccatacccgtgttt 29284399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 10043369 - 10043263
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaaccta 128  Q
    |||| ||||||||||||||||||| || | |||| |||| |||  ||| |||||||| |||||||||| |   |||||| ||||| || ||||||||| |    
T  10043369 gggtatgggtatgggttcggggtgggtgcatataaccccgttacccgtcccatacccatgttttgaaaccagggaaaacccaaacccatacccaaaccca 10043270  T
Q  129 gttaaag 135  Q
    || ||||    
T  10043269 gtcaaag 10043263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 49580064 - 49580162
Alignment:
Q  28 cgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||| ||||||||||| |||| |||| ||||| | | |||  ||| ||||||||||||||||| ||||  |||||| || || || |||||||||    
T  49580064 cgggtttgagtatgggttcgaggtgggtacctatatactcgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacc 49580162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 2970 - 3067
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    ||||||| |||||||||||||||| |||| ||||||||  |||| ||| |  ||||||| |||||||||||  |||||| |||||||| |||||||||    
T  2970 gggtttgagtatgggttcggggtgggtacatatatcccagttatccgtcctgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacc 3067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 128208 - 128111
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||||||||||||||||||| |||| |||||||||||||  ||| || ||||||| || |||||| | | ||||| |||||||| || ||||||    
T  128208 gggtttgggtatgggttcggggtgggtacatatatccccattacccgtcccgtacccgtattatgaaattggaaaaaacccaaactcatactcaaacc 128111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 105556 - 105519
Alignment:
Q  29 gggtttgggtatgggttcggggtgagtacttatatccc 66  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  105556 gggtttgggtatgggttcggggtgggtacatatatccc 105519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 211367 - 211461
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaac 125  Q
    |||||||||||||||||||||| |||| ||||||||  |||  |||  | ||||||| ||||||||||| ||||||| ||||| || ||||||||    
T  211367 gtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaac 211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 14778 - 14871
Alignment:
Q  31 gtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaa 124  Q
    ||||||||||| ||||  |||| |||| ||||| |||||||| ||| |||| |  |||||||||||||| ||||||| |||||||| |||||||    
T  14778 gtttgggtatgtgttcaaggtgggtacctatatacccattatccgtcccatgcatgtgttttgaaatcggagaaaacccaaactcatacccaaa 14871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 14234 - 14174
Alignment:
Q  65 cccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacc 126  Q
    |||||||  ||||||||||||||||||| ||||||  ||||||||||||||| |||||||||    
T  14234 cccattacccgttccatacccgtgtttt-aaatcggggaaaactcaaactcatacccaaacc 14174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1118 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 661 - 716
Alignment:
Q  81 tacccgtgttttgaaatcgaagaaaactcaaactcagacccaaacctagttaaagc 136  Q
    |||||||||||| ||||||| ||||| ||||||||| |||||||| |||| |||||    
T  661 tacccgtgttttaaaatcgaggaaaattcaaactcatacccaaacttagtcaaagc 716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 14851 - 14988
Alignment:
Q  21 ttcagggcgggtttgggtatgggttcggggtgagtacttatatccccattattcgttccatacccgtgttttgaaatcgaagaaaactcaaactcagacc 120  Q
    |||||| |||||||||||||| |||| ||||| ||||| ||||||||||||           |||||||||||||||||  |||||| |||||||| |||    
T  14851 ttcaggacgggtttgggtatgagttcagggtgggtactaatatccccatta-----------cccgtgttttgaaatcggggaaaacccaaactcatacc 14939  T
Q  121 c-aaacctagttaaagcaaagaaaatctgtaaatttaagtttggttcgg 168  Q
    | ||||| | | |||||  |||||| | || ||||||| ||||||||||    
T  14940 ctaaacccaatcaaagcggagaaaacccgtcaatttaaatttggttcgg 14988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University