View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10973_low_5 (Length: 440)

Name: NF10973_low_5
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10973_low_5
NF10973_low_5
[»] chr7 (13 HSPs)
chr7 (141-409)||(8544556-8544824)
chr7 (183-405)||(8580662-8580884)
chr7 (145-409)||(8569238-8569502)
chr7 (20-133)||(8541563-8541676)
chr7 (154-404)||(8575235-8575485)
chr7 (199-397)||(8383868-8384066)
chr7 (154-397)||(8608853-8609096)
chr7 (183-397)||(8589603-8589817)
chr7 (201-398)||(29578663-29578866)
chr7 (283-390)||(8601036-8601143)
chr7 (204-397)||(29582833-29583032)
chr7 (211-369)||(7878750-7878908)
chr7 (350-403)||(8537168-8537221)
[»] chr8 (5 HSPs)
chr8 (145-397)||(12527431-12527683)
chr8 (20-67)||(30208333-30208380)
chr8 (23-64)||(16782313-16782354)
chr8 (20-68)||(1162043-1162091)
chr8 (20-65)||(31333091-31333136)
[»] chr3 (4 HSPs)
chr3 (23-67)||(2008537-2008581)
chr3 (20-66)||(25199077-25199123)
chr3 (20-67)||(1994780-1994827)
chr3 (24-68)||(44880389-44880433)
[»] chr5 (2 HSPs)
chr5 (20-66)||(37872129-37872175)
chr5 (20-66)||(23145929-23145975)
[»] chr2 (3 HSPs)
chr2 (20-66)||(3870162-3870208)
chr2 (20-66)||(34480055-34480101)
chr2 (20-66)||(9009117-9009163)
[»] chr4 (1 HSPs)
chr4 (20-66)||(46550632-46550678)
[»] chr1 (3 HSPs)
chr1 (20-66)||(16253164-16253210)
chr1 (20-66)||(24241612-24241658)
chr1 (24-68)||(34773345-34773389)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 141 - 409
Target Start/End: Original strand, 8544556 - 8544824
Alignment:
Q  141 actaaagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  8544556 actaaagaatccaaatcactttccccatcagattaaccttggttgatcttgttcatggaagattcaaagatgctctcaagctccttcaaaaagtccacaa 8544655  T
Q  241 acacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaact 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8544656 acacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaatt 8544755  T
Q  341 aatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgcttcaac 409  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  8544756 aacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaac 8544824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 8580662 - 8580884
Alignment:
Q  183 ttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaccttt 282  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8580662 ttgatcttgttcatggaagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaacttt 8580761  T
Q  283 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 382  Q
    |||||||||||||||||||||| || ||   ||||||||||| || |||||| ||||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  8580762 ttccctttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagata 8580861  T
Q  383 atcatccaaagcatttcttgctt 405  Q
    ||| |||||||||||| ||||||    
T  8580862 atcgtccaaagcatttattgctt 8580884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 145 - 409
Target Start/End: Original strand, 8569238 - 8569502
Alignment:
Q  145 aagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacac 244  Q
    |||||||| ||||||||| | ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8569238 aagaatccgaatcacttttctcatcagagtcacctttgttgatcttgttcatagcagattcaaagatgctctcaagctccttcagaaagtccacaaacac 8569337  T
Q  245 aaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaata 344  Q
    ||| | |||||| || ||| | | | ||||||| |||||||||||  ||||||| || ||||| |||  |||||||||||| | |||||| || ||| ||    
T  8569338 aaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagta 8569437  T
Q  345 caatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgcttcaac 409  Q
    | ||| | |||||||||||| || || ||||||||||||||||||||||||||||||||||||||    
T  8569438 ctatcgttcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaac 8569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 8541563 - 8541676
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctcatcatgtgtactacatatttcaaaagtatatcaaagacatatggagtctcttt 119  Q
    ||||||||||||||||||||| |||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  8541563 tgaccaaacactatttctttgatcctataaccatattaaaatttctcatcatgtatactacatatttcaaaagtatatcaaagacaaatggagtctcttt 8541662  T
Q  120 aactcaacaatttt 133  Q
    ||||||||||||||    
T  8541663 aactcaacaatttt 8541676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 404
Target Start/End: Original strand, 8575235 - 8575485
Alignment:
Q  154 aatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatc 253  Q
    ||||||||||| ||||||| || |||| ||| ||||| ||| ||| ||||||||||||||||||||||||||| |  ||||| ||||| ||| |   |||    
T  8575235 aatcactttcctcatcagagtagcctttgttaatcttgttcttagaagattcaaagatgctctcaagctcctttagcaagtctacaaaaacagacatatc 8575334  T
Q  254 ttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatcc 353  Q
    |||||| |||||   ||| ||||| |||| ||||||||||||||| ||||| || |||  |||||| ||||||| |||||| |||| || || |||||||    
T  8575335 ttcctgctggttaccatcgatcaaactttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatcc 8575434  T
Q  354 ttcattactttcctcacattgtaaagataatcatccaaagcatttcttgct 404  Q
    ||||||| ||||||| |||||| ||||||||| ||||| |||||| |||||    
T  8575435 ttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgct 8575485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 199 - 397
Target Start/End: Complemental strand, 8384066 - 8383868
Alignment:
Q  199 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 298  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||||  ||||  || | |||   ||||||||||||||| ||||| ||||| ||    
T  8384066 cagattcaaagatgctctcaagctccatcagaaagtccacaaatacaaatgtttctttgtgcttgttaccatcaatcaaccttttccccttcatcatagc 8383967  T
Q  299 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 397  Q
    ||||||||| || ||||||||||  |||  |||| | ||| ||| || |||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  8383966 agaattgatctttattttgtctattgggttgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcatt 8383868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 8608853 - 8609096
Alignment:
Q  154 aatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatc 253  Q
    ||||||||||| ||||||| |||||||  || ||||| |||| |||||||||||| ||  ||||||||||||||| ||||||||||||||||||||  ||    
T  8608853 aatcactttcctcatcagagtaacctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttc 8608952  T
Q  254 ttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatcc 353  Q
     |  || |  |||| |||||||||  | ||||| ||||||||||||| |||||  |||||||||||   || ||  ||| ||||| ||| ||   |||||    
T  8608953 atgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatcc 8609052  T
Q  354 ttcattactttcctcacattgtaaagataatcatccaaagcatt 397  Q
    ||||||||||||| ||  |||||||| |||||||||||| ||||    
T  8609053 ttcattactttccgcatgttgtaaaggtaatcatccaaaacatt 8609096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 397
Target Start/End: Original strand, 8589603 - 8589817
Alignment:
Q  183 ttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaccttt 282  Q
    |||| ||| |||| |||||| |||||  || ||| ||||||| |||| ||||||||||||||| |||  || |   | |||||||  ||||| ||  |||    
T  8589603 ttgaacttgttcaaagcagaatcaaatgtgttcttaagctccctcaagaagtccacaaacacatatgtctcctttggctggttgtcgtcaattaattttt 8589702  T
Q  283 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 382  Q
    | |||||||||||||||||||||||  ||| |||||| ||||  |  |||||||||   | ||  ||||||||||||||||||||||  | |||||||||    
T  8589703 tcccctttatcattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagata 8589802  T
Q  383 atcatccaaagcatt 397  Q
    |||||| ||||||||    
T  8589803 atcatctaaagcatt 8589817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 29578866 - 29578663
Alignment:
Q  201 gattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatca 294  Q
    |||||||||||| | ||||||||||| |||||||| ||||||||  |||  || |  || ||||||      ||||||||||| || ||||| || || |    
T  29578866 gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa 29578767  T
Q  295 ttgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagc 394  Q
    | ||||||| ||| |||||||||||| |||| || ||| ||||||||| ||  | ||||| ||||||||| |||   |||||||||||||| ||||||||    
T  29578766 tcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc 29578667  T
Q  395 attt 398  Q
    ||||    
T  29578666 attt 29578663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 390
Target Start/End: Original strand, 8601036 - 8601143
Alignment:
Q  283 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 382  Q
    ||||||||||||||||||| ||||| |||||| | ||||  |  |  ||| ||||||||| || |||||||||||||||||| |||| | ||||||||||    
T  8601036 ttccctttatcattgcagagttgatcttcattctttctattgaagtaagcatggaactaacactatcatccttcattacttttctcatagtgtaaagata 8601135  T
Q  383 atcatcca 390  Q
    ||||||||    
T  8601136 atcatcca 8601143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 397
Target Start/End: Complemental strand, 29583032 - 29582833
Alignment:
Q  204 tcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatcattg 297  Q
    ||||||||||  | |||||||||||||||||||||||||||  |||| ||||  || ||||||      ||||||||||| |||||||| || || ||||    
T  29583032 tcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgctggttgccatgattatcaatcaaactttttccgttcataattg 29582933  T
Q  298 cagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 397  Q
    |||||||||| ||  |||||||| |||| |  | | |||||||||     | ||||| ||||||||| ||||  ||||||||||| || |||||||||||    
T  29582932 cagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgtaaagatagtcgtccaaagcatt 29582833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 369
Target Start/End: Complemental strand, 7878908 - 7878750
Alignment:
Q  211 tgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatatt 310  Q
    |||||||||||||| ||| |||||| ||||||||||  |  || |  |  || |||| |||||| ||  ||| ||||||||| |||||||||||||| |     
T  7878908 tgctctcaagctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 7878809  T
Q  311 cattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctca 369  Q
    || ||| || ||||| | |||||| ||| |||  | |||||||||||||||||||||||    
T  7878808 caatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctca 7878750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 8537168 - 8537221
Alignment:
Q  350 atccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgc 403  Q
    ||||||||| |||||| |||||||||| ||||| ||||||||||||||| ||||    
T  8537168 atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgc 8537221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 145 - 397
Target Start/End: Original strand, 12527431 - 12527683
Alignment:
Q  145 aagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacac 244  Q
    |||||||  ||||||||||  || | || ||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  12527431 aagaatcagaatcactttcttcaccggagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacac 12527530  T
Q  245 aaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaata 344  Q
    ||||| ||||||||| | |||   ||||||||| |||||||||||||||||||||||||  ||    |||||||||||||| |  ||| ||||||||| |    
T  12527531 aaatgtatcttcctgcttgtttccatcaatcaagctttttccctttatcattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaaca 12527630  T
Q  345 caatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 397  Q
    |||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||    
T  12527631 caattatccttcatgattttcctcacatggtaaagatagtcatccaaagcatt 12527683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 30208333 - 30208380
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctca 67  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  30208333 tgaccaaacactttttctttggtcctgtgaccatattagaatttctca 30208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 16782354 - 16782313
Alignment:
Q  23 ccaaacactatttctttggtcctatgatcatattagaatttc 64  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  16782354 ccaaacactatttatttggtcttatgatcatattagaatttc 16782313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 1162091 - 1162043
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctcat 68  Q
    |||||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  1162091 tgaccaaacactttttctttagtcctatgaccatataagaatttctcat 1162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 31333136 - 31333091
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttct 65  Q
    ||||||||||||||||||||| || | ||| |||||||||||||||    
T  31333136 tgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 2008537 - 2008581
Alignment:
Q  23 ccaaacactatttctttggtcctatgatcatattagaatttctca 67  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  2008537 ccaaacactatttctttggtcctgtgaccatattagaatttctca 2008581  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 25199077 - 25199123
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  25199077 tgaccaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 1994827 - 1994780
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctca 67  Q
    |||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  1994827 tgaccaaatactatttctttggtcatgtgaccatattagaatttctca 1994780  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 44880389 - 44880433
Alignment:
Q  24 caaacactatttctttggtcctatgatcatattagaatttctcat 68  Q
    |||||||||||||||| || ||||||  |||||||||||||||||    
T  44880389 caaacactatttctttagttctatgaggatattagaatttctcat 44880433  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 37872175 - 37872129
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  37872175 tgaccaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 23145975 - 23145929
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  23145975 tgaccaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3870162 - 3870208
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  3870162 tgaccaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 34480101 - 34480055
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  34480101 tgaccaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 9009117 - 9009163
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||||||| ||||||| | ||| ||||||||||||||||    
T  9009117 tgaccaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 46550678 - 46550632
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||| ||||||||||| | ||| ||||||||||||||||    
T  46550678 tgaccaaacactttttctttggtcttgtgaccatattagaatttctc 46550632  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 16253164 - 16253210
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||||||| |||||||| || | ||||||||||||||||||||    
T  16253164 tgaccaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 24241612 - 24241658
Alignment:
Q  20 tgaccaaacactatttctttggtcctatgatcatattagaatttctc 66  Q
    |||||||| ||| ||||||||||||| ||| ||||||||||||||||    
T  24241612 tgaccaaatactttttctttggtcctgtgaccatattagaatttctc 24241658  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 34773389 - 34773345
Alignment:
Q  24 caaacactatttctttggtcctatgatcatattagaatttctcat 68  Q
    |||||||| ||||||||||||| | | ||||||||||||||||||    
T  34773389 caaacactttttctttggtcctgtaaccatattagaatttctcat 34773345  T

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