View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_6 (Length: 411)
Name: NF10973_low_6
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 53489434 - 53489052
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
53489434 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcatacaaatgtgtacacccaaggcaaaggggacagagagcaacaat |
53489335 |
T |
|
| Q |
111 |
tctatttatggtttgatccaactacaagttttcatacctattcttttctctggaatcctgcacatgttgtgtaagtttcttaatttcaaaatgtttattt |
210 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
53489334 |
tctatttatggtttgacccaactacaagttttcatacctattcttttctctggaatcctgcacatgttgtgtaagtttctaaatttcaaaatgttta-tt |
53489236 |
T |
|
| Q |
211 |
tcaaattctttgtttagataatggaatcaactagcacatcaaatattaagatagagcttatttattttaccgtttttataaatttcacaaatcttgagat |
310 |
Q |
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||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
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| T |
53489235 |
tcaaattctttgtttggataatggaatcaaatagcacatc-aatattaagatagagcttatttattggaccgtttttataaattttaaaaatcttgagat |
53489137 |
T |
|
| Q |
311 |
aataatttaaatat-aaaaagagagtggatcaaatgaaaattttaaaagatttgggcaaatttcaaattttaaggaagttgaggg |
394 |
Q |
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| T |
53489136 |
aataatttaaacataaaaaagagagtggatcaaatgaaaattttaaaagatttgggcaaatttcaaattttaaggaagttgaggg |
53489052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 53492634 - 53492732
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaa |
109 |
Q |
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| T |
53492634 |
gatgaaattgactttgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgtttagccaaggcaaaggtgacagagagcaacaa |
53492732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 53498939 - 53499114
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||| ||||||||||||||| |
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| T |
53498939 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaat |
53499038 |
T |
|
| Q |
111 |
tctatttatggtttgatccaactacaagttttcatacctattcttttctctggaatcctgcacatgttgtgtaagt |
186 |
Q |
| |
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| || | |||||||| |||||| || |||||| || || || |||| ||||||||| || | |||||||||| |
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| T |
53499039 |
tttacctttggtttgacccaactgcagattttcacacatactcaattctatggaatcctcaacgtattgtgtaagt |
53499114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 52590713 - 52590825
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
||||||||||| |||||||| ||||| || || |||||||||||||| || |||||||| || | || | ||||| |||||| | | ||| ||||||| |
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| T |
52590713 |
gatgaaatagattttgaatttttgggtaacttaagtggtgatccttatattgttcatacaaacatttatgcacaagggaaaggaaataaagaacaacaat |
52590812 |
T |
|
| Q |
111 |
tctatttatggtt |
123 |
Q |
| |
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||||||| ||||| |
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| T |
52590813 |
tctatttgtggtt |
52590825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 53502077 - 53502192
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
||||| ||||||| |||||| | |||||| | |||||||| || ||||| |||| || ||||| | || |||||||||||| |||| || ||||||| |
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| T |
53502077 |
gatgagatagactatgaatttctaggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaat |
53502176 |
T |
|
| Q |
111 |
tctatttatggtttga |
126 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
53502177 |
tctatctatggtttga |
53502192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 53494981 - 53495103
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
||||| || |||||||||||||| || ||| ||||||| || || |||| |||| |||||||||| ||||| |||||| | ||||| ||||||| |
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| T |
53494981 |
gatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaacaat |
53495080 |
T |
|
| Q |
111 |
tctatttatggtttgatccaact |
133 |
Q |
| |
|
|| || ||||||||||||||||| |
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| T |
53495081 |
tccatctatggtttgatccaact |
53495103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 37188574 - 37188696
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| || ||||| |||| |||||||||| | |||||| ||||| ||||||||||||||| |
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| T |
37188574 |
gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
37188673 |
T |
|
| Q |
111 |
tctatttatggtttgatccaact |
133 |
Q |
| |
|
|||| |||||||||| |||||| |
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| T |
37188674 |
tctacctatggtttgacccaact |
37188696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 16942130 - 16942245
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||||||||||||| || ||||||| || || | ||| ||||| ||||| | ||||||||||||| |
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|
| T |
16942130 |
gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat |
16942229 |
T |
|
| Q |
111 |
tctatttatggtttga |
126 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
16942230 |
tctatttgtggtttga |
16942245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 17012795 - 17012910
Alignment:
| Q |
11 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
110 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||||||||||||| || ||||||| || || | ||| ||||| ||||| | ||||||||||||| |
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|
| T |
17012795 |
gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat |
17012894 |
T |
|
| Q |
111 |
tctatttatggtttga |
126 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
17012895 |
tctatttgtggtttga |
17012910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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