View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_7 (Length: 397)
Name: NF10973_low_7
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 36 - 378
Target Start/End: Original strand, 8293547 - 8293890
Alignment:
| Q |
36 |
gaacctgtggagctgcttacaattgattgaaactggtaaatcttatgtgtccatttattttt-ctcttctcttccgtgttaatttctctgattccagata |
134 |
Q |
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| T |
8293547 |
gaacctgtggagctgcttacaattgactgaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagata |
8293646 |
T |
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| Q |
135 |
ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctannnnnnnaataacaaat |
234 |
Q |
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| T |
8293647 |
ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctatttttttaataacaaat |
8293746 |
T |
|
| Q |
235 |
gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293747 |
gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt |
8293846 |
T |
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| Q |
335 |
atatagttatgagttactgctattagttttatgtgtgtaatatg |
378 |
Q |
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| T |
8293847 |
atatagttatgagttactgctattagttttatgtgtgtaatatg |
8293890 |
T |
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