View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10973_low_8 (Length: 365)
Name: NF10973_low_8
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8251874 - 8251528
Alignment:
| Q |
1 |
ggcgcaaaggcattgagcaagtcccatcatatagcaataggataggagagagtcatagcatagagtttccaattaagaagaagaaaacagaaacacaata |
100 |
Q |
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| T |
8251874 |
ggcgcaaaggcattgagcaagtcccatcatatagcaataggataggagagagtcatagcatagagtttccaattaagaagaagaaaacagaaacacaata |
8251775 |
T |
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| Q |
101 |
gtttcacnnnnnnnnnnnnnaactttctttatcttttgaaaaagctgcaatgttgatttggagaggtggtaaaaaactattggcttcaaggtacatggct |
200 |
Q |
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| T |
8251774 |
gtttcactttttttgtttttaactttctttatcttttgaaaaagctgcaatgttgatttggagaggtggtaaaaaactattggcttgaaggtacatggct |
8251675 |
T |
|
| Q |
201 |
aaatccaaaaccttatcttcaactctgctgtagtaaaagctcattttgagctacatttgtgtaccatccctctatgacataagtgcttaccgagtaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8251674 |
aaatccaaaaccttatcttcaactctgctgtagtaaaagctcattttgagctacatttgtgtaccatccctctatgacataagtgcttaccgagtaaaag |
8251575 |
T |
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| Q |
301 |
ccattttcattggatgttgccattgtgtttctattacttctataaat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8251574 |
ccattttcattggatgttgccattgtgtttctattacttctataaat |
8251528 |
T |
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