View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10973_low_9 (Length: 330)
Name: NF10973_low_9
Description: NF10973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10973_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 17431948 - 17432116
Alignment:
| Q |
148 |
acttggctgcaaaatcaacatacactgatgccacacttggctct-taagttttttgctgatactgattaattttttatcaaataagctacctatctatca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17431948 |
acttggctgcaaaatcaacatacactgatgccgcacttggctctataagttttttgctgatactgattaatattttatcaaataagctacctatctatca |
17432047 |
T |
|
| Q |
247 |
cacaaaggaaatgcatgagctgtgaatggtgacacagtgttaaagtgg--aacatctattgccatttat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17432048 |
cacaaaggaaatgcatgagctgtgaatggtgacacagtgttaaagtgggcaacatctattgccatttat |
17432116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 3653753 - 3653687
Alignment:
| Q |
10 |
agttttacttgtgttgtaaaaacggctccctttaagtgagacacatggaaaatgggatgagttcttg |
76 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3653753 |
agttttacttgtgttgtcgaaacggctcccattaagtgagacacacagaaaatgggaggagttcttg |
3653687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 3675429 - 3675494
Alignment:
| Q |
9 |
tagttttacttgtgttgtaaaaacggctccctttaagtgagacacatggaaaatgggatgagttcttg |
76 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
3675429 |
tagtttcacttgtgttgtcgaaatggctccctttaagcgag--acatggaaaatgggaggagttcttg |
3675494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University