View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10974_low_1 (Length: 371)
Name: NF10974_low_1
Description: NF10974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10974_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 11379506 - 11379263
Alignment:
| Q |
11 |
gtgagatgaacaaaaagagtaggccagagctttgttcagaaggttggagggtgttggaaccaatgaagacttcttgtagtggcacaaacaactttggact |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11379506 |
gtgatatgaacaaaaagagtaggccagagctttgttcagaaggttggagggtgttggaacctatgaaggtttcttgtagtggcacaaacaactttggact |
11379407 |
T |
|
| Q |
111 |
taagtcctgtttggataaacagcttaataggacaacttgaaagtggctatgacacttcacaaaggacaaattctaagcttgtatgcaaaccatgactagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11379406 |
taagtcctgtttggataaacagcttaataggacaacttgaaagtggctatgacacttcacaaaggacaaattctaagcttgtatgcaaaccatgactagt |
11379307 |
T |
|
| Q |
211 |
ttcatagtcaccctgtcaaaaaccagccattttttgtcttctcat |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11379306 |
ttcatagtca-cctgtcaaaaaccagccattttttgtcttctcat |
11379263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 11379254 - 11379190
Alignment:
| Q |
288 |
atatatatttagtttctagcagatatagttgtgattacaaattgttcattccctcagttttttat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11379254 |
atatatatttagtttctagcagatatagttgtgattacaaattgttcattccctcagttttttat |
11379190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University