View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10974_low_2 (Length: 354)

Name: NF10974_low_2
Description: NF10974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10974_low_2
NF10974_low_2
[»] chr7 (16 HSPs)
chr7 (1-337)||(23861211-23861547)
chr7 (45-333)||(23864809-23865097)
chr7 (45-311)||(23844034-23844300)
chr7 (1-311)||(23840586-23840896)
chr7 (45-311)||(23857268-23857534)
chr7 (131-311)||(23802490-23802670)
chr7 (131-311)||(23817442-23817622)
chr7 (167-318)||(23791688-23791839)
chr7 (156-311)||(23852930-23853085)
chr7 (199-313)||(23838094-23838208)
chr7 (134-311)||(23807958-23808135)
chr7 (156-311)||(23849059-23849214)
chr7 (156-311)||(23855305-23855460)
chr7 (167-311)||(23828102-23828246)
chr7 (167-258)||(23797963-23798054)
chr7 (131-258)||(23823181-23823308)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 23861547 - 23861211
Alignment:
Q  1 ggaagatgtgaaacttttgggagttgtgggaagcccannnnnnngcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23861547 ggaagatgtgaaacttttgggagttgtgggaagcccatttttttgcagggtacagattgcactcaaattcaaaggaattgaatacgaatttgttaaagaa 23861448  T
Q  101 gacttgaccaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861447 gacttgacaaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttg 23861348  T
Q  201 tgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861347 tgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcga 23861248  T
Q  301 tgacaaggtaagttttctaaagcttttatattgtgat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  23861247 tgacaaggtaagttttctaaagcttttatattgtgat 23861211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 45 - 333
Target Start/End: Complemental strand, 23865097 - 23864809
Alignment:
Q  45 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 144  Q
    |||||||||||||||| || || |  ||||||||||||||  ||| |||| ||||||||||| |||||||||| ||||||||||||| ||||||||| ||    
T  23865097 gcagggtacagattgctcttaagtggaaaggaattgaatacaaatatgttcaagaagacttggccaacaaaagcgatcttctcctcatatacaatccagt 23864998  T
Q  145 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 244  Q
    |||||||||  |||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  23864997 tcataagaaggttccagtttttgttcacaatgagaagcctatatcagaatctcttgtgattcttcagtatattgatgaggtttggaaacaaaatcccatt 23864898  T
Q  245 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaagttttctaaagcttttatattg 333  Q
    ||  |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||| |||||| ||||    
T  23864897 ttaccgtccgatccataccaaaaatcattggctcgattttggtccaagttcatcgatgacaaggtaaatttcctaaaacttttaaattg 23864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 23844300 - 23844034
Alignment:
Q  45 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 144  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||| ||||| | ||  ||| ||| ||||| |  || |||||||||||||| ||    
T  23844300 gcagggtacagattgctctcaagttgaagggaattgaatatgaatttgttgaagaaaatttagccaccaagagtgaacaacttctcaaatacaatccagt 23844201  T
Q  145 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 244  Q
    |||||||||  |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||    
T  23844200 tcataagaaggttccagtttttgttcacaatgagaaacctatatcagaatcccttgtgattcttgagtacattgatgaggtttggaagcaaaaccctatt 23844101  T
Q  245 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||| | ||||||||| |||||| | | ||||||||||||||||| ||||||||||||||||||||||    
T  23844100 ttgccttctgatccacaccaaagagccttggctcgattttggtcaaaattcatcgatgacaaggtaa 23844034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 23840896 - 23840586
Alignment:
Q  1 ggaagatgtgaaacttttgggagttgtgggaagcccannnnnnngcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaa 100  Q
    |||| |||||||||||||||||| |   |||||||||       |||||||||||||||| || || || || |||||||||||||||||| || |||||    
T  23840896 ggaacatgtgaaacttttgggagctactggaagcccatttgtgtgcagggtacagattgctctaaagttgaagggaattgaatatgaatttcttgaagaa 23840797  T
Q  101 gacttgaccaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttg 200  Q
     | ||| |||  || ||||| ||||| || ||||| ||||| |||||||||||  |||||||| ||||||||||||| ||||| || |||||||| ||||    
T  23840796 aatttggccacaaagagtgaacttcttcttaaatataatccagttcataagaaggttccagtttttgttcacaatgataagcccatttcagaatctcttg 23840697  T
Q  201 tgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcga 300  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |  |||||||| |||||| | | |||||||||||||||||||||||||||||    
T  23840696 tgattcttgagtacattgatgaggtttggaagcaaaaccccattttgccaactgatccacaccaaagagccttggctcgattttggtcgaaattcatcga 23840597  T
Q  301 tgacaaggtaa 311  Q
    |||||||||||    
T  23840596 tgacaaggtaa 23840586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 23857534 - 23857268
Alignment:
Q  45 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 144  Q
    |||||||||||||||| || ||||| || |||||||||||  ||||| || ||||| || || ||||||||||||| ||||| ||||| || ||||| ||    
T  23857534 gcagggtacagattgctctaaaattgaagggaattgaatacaaatttcttgaagaaaacatggccaacaaaagtgaacttcttctcaagtataatccagt 23857435  T
Q  145 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 244  Q
    | |||| || || |||||| ||||||||||||| ||||| |||||||| |||||| ||||| ||||||| |||||||||  ||||||||||||||| ||     
T  23857434 ttataaaaagataccagtttttgttcacaatgaaaagcctatatcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatcctatc 23857335  T
Q  245 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||| | |||||||||||||||| | | ||||||||||||||||| || |||||||| ||||||||||    
T  23857334 ttgccttctgatccataccaaagagccttggctcgattttggtctaacttcatcgacgacaaggtaa 23857268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 311
Target Start/End: Complemental strand, 23802670 - 23802490
Alignment:
Q  131 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 230  Q
    |||||||| || ||| |||||||| |||| ||| || |||| ||||| ||||| |||||||| ||||||||||||||||| || |||||||||  |||||    
T  23802670 aaatacaaccctgtttataagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatgagacttgga 23802571  T
Q  231 aacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||||||||||||| ||| | |||||||| | | ||| | | |||||||| || ||||| || ||||| ||||| |||||||    
T  23802570 aacaaaatcccatattgccttctgatccttccaaaagagccttggctcgtttctggtccaatttcattgatgataaggtaa 23802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 311
Target Start/End: Complemental strand, 23817622 - 23817442
Alignment:
Q  131 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 230  Q
    |||||||| || ||| |||||||  |||| ||| || |||| ||||| ||||| ||| |||| || |||||||||||||| || |||||||||  |||||    
T  23817622 aaatacaaccctgtttataagaaggttcctgtttttattcataatgataagcctatagcagagtcacttgtgattcttgaatatattgatgagacttgga 23817523  T
Q  231 aacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    |||||||||| || ||| | |||||||||||||||| | | |||| |||||||||||| ||  |||| |||||||||||||    
T  23817522 aacaaaatccaatattgccttctgatccataccaaagagccttggttcgattttggtccaacctcatagatgacaaggtaa 23817442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 23791839 - 23791688
Alignment:
Q  167 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaa 266  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| || ||| | |||||||| ||| |||    
T  23791839 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatccttacgaaa 23791740  T
Q  267 aatcattggctcgattttggtcgaaattcatcgatgacaaggtaagttttct 318  Q
     | | |||||||| || ||| | || ||||| ||||| ||||||| ||||||    
T  23791739 gagccttggctcgtttctggaccaagttcatagatgataaggtaatttttct 23791688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 23852930 - 23853085
Alignment:
Q  156 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 255  Q
    |||||||||||||||| |||| |||||| || |||||||| | ||||||||||||||| |||||||||| |||||||||||| || || ||| |   |||    
T  23852930 ttccagttcttgttcataatgggaagcctatttcagaatcacgtgtgattcttgagtatattgatgaggcttggaaacaaaaccctatcttgcccaatga 23853029  T
Q  256 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||| || |||| | | ||||  || |||||||| || ||||| |||||||||||||    
T  23853030 tccttatcaaagagccttggaccgtttttggtctaagttcattgatgacaaggtaa 23853085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 23838094 - 23838208
Alignment:
Q  199 tgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatc 298  Q
    |||||||||||||||||| ||||||  ||||||||||||||| || ||| | |||||||| || |||| | | |||||||| || ||||| || |||||     
T  23838094 tgtgattcttgagtacatcgatgagacttggaaacaaaatcctatcttgccttctgatccttatcaaagagccttggctcgtttctggtctaagttcatt 23838193  T
Q  299 gatgacaaggtaagt 313  Q
    |||||||||||||||    
T  23838194 gatgacaaggtaagt 23838208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 23808135 - 23807958
Alignment:
Q  134 tacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaac 233  Q
    ||||| || ||| |||||||| |||| ||| | ||| | ||||| ||||| || || ||||| ||||||||||||||||| |||||||||  ||||||||    
T  23808135 tacaaccctgtttataagaaagttcctgttttagtttataatgacaagcccatctctgaatcacttgtgattcttgagtatattgatgagacttggaaac 23808036  T
Q  234 aaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    |||| || || ||| | |||||||| || |||| | |  ||||||| || ||||| || ||||| |||||||||||||    
T  23808035 aaaaccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtccaatttcattgatgacaaggtaa 23807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 23849059 - 23849214
Alignment:
Q  156 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 255  Q
    |||| ||||||||||| |||| ||| || ||||||||||| | ||||||| ||||||| ||||| |||| ||||||||| || || || ||| | |||||    
T  23849059 ttcctgttcttgttcataatgggaatcccatatcagaatctcgtgtgattattgagtatattgacgaggcttggaaacagaaccctatcttgccttctga 23849158  T
Q  256 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||| ||| ||| | | |||| ||| |||||||| || ||||| ||||| |||||||    
T  23849159 tccttacaaaagagctttggatcggttttggtcaaagttcattgatgaaaaggtaa 23849214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 23855305 - 23855460
Alignment:
Q  156 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 255  Q
    |||| |||||||||||||||||||||||  | ||||| || | ||||||||||||||| |||||||||  |||||||||||| || || ||| | |||||    
T  23855305 ttcctgttcttgttcacaatgagaagcccgtttcagagtctcgtgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctga 23855404  T
Q  256 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
    ||| ||| ||| | | |||| ||| |||||| | || ||| | ||||| |||||||    
T  23855405 tccttacaaaagagccttggatcgcttttgggccaagttcctagatgagaaggtaa 23855460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 311
Target Start/End: Complemental strand, 23828246 - 23828102
Alignment:
Q  167 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaa 266  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||  |||||||   |||||| |||||||| || ||  | |||||||| ||| |||    
T  23828246 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatgttgatgaaacttggaagcaaaatcctatcttaccttctgatccttacaaaa 23828147  T
Q  267 aatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 311  Q
     | | |||||||| || ||| | || ||||| ||||| |||||||    
T  23828146 gagccttggctcgtttctggacaaagttcatagatgataaggtaa 23828102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 23798054 - 23797963
Alignment:
Q  167 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatcc 258  Q
    ||||| ||||| ||||| ||| ||||||| ||||||||| |||| || |||||||||  ||||||||||||||| || ||| | ||||||||    
T  23798054 gttcataatgataagcctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatcctatcttgccttctgatcc 23797963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 23823308 - 23823181
Alignment:
Q  131 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 230  Q
    |||||||| || ||| |||||||| |||| ||  | ||||| ||||| || || ||| ||||||| ||||||||| |||| || |||||||||  |||||    
T  23823308 aaatacaaccctgtttataagaaagttcctgtattagttcataatgataaacctatagcagaatctcttgtgattattgaatatattgatgagacttgga 23823209  T
Q  231 aacaaaatcccattttgtcgtctgatcc 258  Q
    |||||||||| || ||| | ||||||||    
T  23823208 aacaaaatccaatcttgccttctgatcc 23823181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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