View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10974_low_3 (Length: 253)
Name: NF10974_low_3
Description: NF10974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10974_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 51573871 - 51573653
Alignment:
| Q |
18 |
tttatgtgattcatcctcacagaaaatggcctatcgaccaacctcctcacatacacctttggcttcttaaccgaagttcggaaggaattgttgttatcag |
117 |
Q |
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| T |
51573871 |
tttatgtgattcatcctcacagaaaatggcctatcgaccaacctcctcacatacacctttggcttcttaaccgaagtgcggaaggaattgttgttatcag |
51573772 |
T |
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| Q |
118 |
caaaaggc-ctcttaattggaagtgtagtaagcctctactgaacagaacaatcagagttattaattattattactacatgttcccaaattgaaagttgac |
216 |
Q |
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| T |
51573771 |
caaaaggcactcttaattggaagtgtagtaagcctctactgagcagaacaatcagag-------ttattattactacatgttcccaaattgaaagttgac |
51573679 |
T |
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| Q |
217 |
aataacttctttcctctcacaggttc |
242 |
Q |
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| T |
51573678 |
aataacttctttcctctcacaggttc |
51573653 |
T |
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