View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10974_low_4 (Length: 248)
Name: NF10974_low_4
Description: NF10974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10974_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39228281 - 39228510
Alignment:
| Q |
1 |
caaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagag |
100 |
Q |
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| T |
39228281 |
caaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagag |
39228380 |
T |
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| Q |
101 |
ggtatataatacaaaggtgaaactaggattatccattatttgtggaataactagcttagaaagtgaagttttagaatatgataagagtttatagcactga |
200 |
Q |
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| T |
39228381 |
ggtatatagtacaaaggtgaaactaggagtatccattatttgtggaataactagcttagaaagtgaagttttagaatatgataagagtttatagcactga |
39228480 |
T |
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| Q |
201 |
atatgcagagagagtgagaagaagagttct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39228481 |
atatgcagagagagtgagaagaagagttct |
39228510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25547480 - 25547643
Alignment:
| Q |
1 |
caaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaa---acagaaacagaaagagtaagaaa |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
25547480 |
caaaatcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaagaaacaaaaacagaaagagtaagaaa |
25547579 |
T |
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| Q |
98 |
gagggtatataatacaaaggtgaaactaggattatccattatttgtggaataactagcttagaa |
161 |
Q |
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| T |
25547580 |
gagggtatagagtacaaaggtgaaactaggagtattcattatttgtggaataactagcttagaa |
25547643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 25547668 - 25547739
Alignment:
| Q |
159 |
gaaagtgaagttttagaatatgataagagtttatagcactgaatatgcagagagagtgagaagaagagttct |
230 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25547668 |
gaaagtgaagttttagaatatcataagagtttatagtactgaatatgcagagagagtgagaagaagagttct |
25547739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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