View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10975_high_8 (Length: 203)
Name: NF10975_high_8
Description: NF10975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10975_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 28591015 - 28590859
Alignment:
| Q |
2 |
ttctggttctgctactgtaaccaagttaggtgaatcttctaaagatgctaatcagaaatccattgttgcgatggattctgatgcttccnnnnnnnttatt |
101 |
Q |
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| T |
28591015 |
ttctggttctgctactgtaaccaagttaggtgaatcttctaaagttgctaatcagaaatccattgttgcgatggattctgatgcttccaaaaaaattact |
28590916 |
T |
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| Q |
102 |
gttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtatgtattc |
158 |
Q |
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| T |
28590915 |
gttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtatgtattc |
28590859 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 6676304 - 6676360
Alignment:
| Q |
101 |
tgttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtatgtatt |
157 |
Q |
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| T |
6676304 |
tgttcatagcactggccattgcacttcagtttacataggagtcacaaggtatctatt |
6676360 |
T |
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