View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10975_low_1 (Length: 403)
Name: NF10975_low_1
Description: NF10975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10975_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 13961095 - 13960721
Alignment:
| Q |
21 |
ccctgacctggagtagccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcat |
120 |
Q |
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| T |
13961095 |
ccctgacctggagtagccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcat |
13960996 |
T |
|
| Q |
121 |
tcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagttgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960995 |
tcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagttgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcacc |
13960896 |
T |
|
| Q |
221 |
aggacctttattattatactcataaaatgtacatgtatctttaaaagcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgttt |
320 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960895 |
aggacctttattattgtactcataaaatgtacatgtatctttaaaagcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgttt |
13960796 |
T |
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| Q |
321 |
gaatccataataacaactttggaatatgacttccatggtcttcctaggtaagctattttggggtctatctctgct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13960795 |
gaatccataataacaactttggaatatgacttccatggtcttcctaggtaagctattttggggtctatctttgct |
13960721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 382
Target Start/End: Complemental strand, 13968213 - 13967898
Alignment:
| Q |
67 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
166 |
Q |
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| T |
13968213 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13968114 |
T |
|
| Q |
167 |
tgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattattatactcataaaatgtacatgtatctttaaaa |
266 |
Q |
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||||| || | |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
13968113 |
tgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtatccttaaaa |
13968014 |
T |
|
| Q |
267 |
gcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgtttgaatccataataacaactttggaatatgacttccatggtcttccta |
366 |
Q |
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|||| ||||| | |||||||||||||||||| |||| || |||| ||| |||| ||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
13968013 |
gcacctcccaccattggcatgtaaccttcaggggcaaacatagcatcaatggttgagtccattatgacaactttggaatatagcttccatggtcttccta |
13967914 |
T |
|
| Q |
367 |
ggtaagctattttggg |
382 |
Q |
| |
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|||||| || |||||| |
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| T |
13967913 |
ggtaagataatttggg |
13967898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 270
Target Start/End: Complemental strand, 13978299 - 13978096
Alignment:
| Q |
67 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
166 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| || ||| | |||||||| || | |
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| T |
13978299 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13978200 |
T |
|
| Q |
167 |
tgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattattatactcataaaatgtacatgtatctttaaaa |
266 |
Q |
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||||| || | |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
13978199 |
tgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtatccttaaaa |
13978100 |
T |
|
| Q |
267 |
gcac |
270 |
Q |
| |
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|||| |
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|
| T |
13978099 |
gcac |
13978096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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