View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10975_low_2 (Length: 385)
Name: NF10975_low_2
Description: NF10975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10975_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 203 - 370
Target Start/End: Complemental strand, 30651858 - 30651691
Alignment:
| Q |
203 |
gataaagtgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
302 |
Q |
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| T |
30651858 |
gataaaatgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
30651759 |
T |
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| Q |
303 |
tcaagtttctcaatcatctgtgttttttaatcaaagactagttttccatctccagctttgaagaatat |
370 |
Q |
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| T |
30651758 |
tcaagtttctcaatcatctgtgttcttaaatcaaagactagttttccatctcctgctttgaagaatat |
30651691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 203 - 370
Target Start/End: Complemental strand, 31778204 - 31778037
Alignment:
| Q |
203 |
gataaagtgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
302 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31778204 |
gataaaatgatcctaataattgagaacaaaaactaactaatgatctattcctccatttttcttatagattattatttcggaatatgctttttccacaccg |
31778105 |
T |
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| Q |
303 |
tcaagtttctcaatcatctgtgttttttaatcaaagactagttttccatctccagctttgaagaatat |
370 |
Q |
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| T |
31778104 |
tcaagttcctcaatcatctgtgttcttaaatcaaagactagttttccatctcctgctttgaagaatat |
31778037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 30652074 - 30651940
Alignment:
| Q |
68 |
aaaaccagagaccattcaatacaatagaaagagaaatcatatcatcttgcaaatagaactataa-taaacaaatagaaagatagtacaaatactttcaat |
166 |
Q |
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| T |
30652074 |
aaaaccagagaccattcaatacaatagaaagagaaatcatatcatcttgcaaatagaactataattaaacaaatagaaagatagtacaaatactttcaat |
30651975 |
T |
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| Q |
167 |
ataattttgtcaaagctgcaacattcagaattaca |
201 |
Q |
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| T |
30651974 |
ataaatttgtcaaagctgcaacattcataattaca |
30651940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 31778353 - 31778288
Alignment:
| Q |
136 |
caaatagaaagatagtacaaatactttcaatataattttgtcaaagctgcaacattcagaattaca |
201 |
Q |
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| T |
31778353 |
caaatagaaagacggtacaaatactttcaatataaaattgtcaaagctgcaacattcataattaca |
31778288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 211 - 370
Target Start/End: Complemental strand, 25628478 - 25628316
Alignment:
| Q |
211 |
gatcctaataattgagaacaa---aaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccgtcaag |
307 |
Q |
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| T |
25628478 |
gatcctaataattgagaacaacaaaaactaactaatgatttattcctccatttttcttatagaatataattcttgaatatgtttcttcaacaccgtcaag |
25628379 |
T |
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| Q |
308 |
tttctcaatcatctgtgttttttaatcaaagactagttttccatctccagctttgaagaatat |
370 |
Q |
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| T |
25628378 |
ttcctcaatcatctgtgttcttaaatcaaagactagttttccatctcctgctttgaagaatat |
25628316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 25629982 - 25629884
Alignment:
| Q |
16 |
atatgtttatcattggataataaagttttccaaatatatgcaagttttacataaaaccagagaccattcaatacaatagaaagagaaatcatatcatct |
114 |
Q |
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| T |
25629982 |
atatgtttgtcattggattataaagttttccaaatatatgctatttttacataaaaccagaggccactcaatacaacagaaagagaaatcatatcatct |
25629884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 25629058 - 25628993
Alignment:
| Q |
136 |
caaatagaaagatagtacaaatactttcaatataattttgtcaaagctgcaacattcagaattaca |
201 |
Q |
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|||||||||||||| |||||||||||| ||||||| | || |||||||||| ||||| ||||||| |
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| T |
25629058 |
caaatagaaagatattacaaatacttttaatataaaatggttaaagctgcaaaattcataattaca |
25628993 |
T |
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