View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10975_low_4 (Length: 250)
Name: NF10975_low_4
Description: NF10975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10975_low_4 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13960557 - 13960313
Alignment:
| Q |
1 |
catcggcagctacgaaacattgttgttcttctaatggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgat |
100 |
Q |
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| T |
13960557 |
catcggcagctacgaaacattgttgttcttctaatggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgat |
13960458 |
T |
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| Q |
101 |
tgtgccagagatgctgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttg |
200 |
Q |
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| T |
13960457 |
tgtgccagagatgctgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttg |
13960358 |
T |
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| Q |
201 |
tctgctgttactcggagtgcaactgcttgatgtttctctgctcct |
245 |
Q |
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| T |
13960357 |
tctgctgttactcggagtgcaactgcttgatgtttctctggtcct |
13960313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 13967674 - 13967491
Alignment:
| Q |
48 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
147 |
Q |
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| T |
13967674 |
attagtttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattgga |
13967575 |
T |
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| Q |
148 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgat |
231 |
Q |
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| T |
13967574 |
cgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 49870992 - 49871189
Alignment:
| Q |
35 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
134 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
49871091 |
T |
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| Q |
135 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
232 |
Q |
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| T |
49871092 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
49871189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 49865135 - 49865249
Alignment:
| Q |
115 |
tgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcg |
214 |
Q |
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| T |
49865135 |
tgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacg |
49865234 |
T |
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| Q |
215 |
gagtgcaactgcttg |
229 |
Q |
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| T |
49865235 |
gagggccactgcttg |
49865249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 6875 - 6835
Alignment:
| Q |
96 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
136 |
Q |
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| T |
6875 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
6835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 44067730 - 44067770
Alignment:
| Q |
96 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
136 |
Q |
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| T |
44067730 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44067770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 44087574 - 44087534
Alignment:
| Q |
96 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
136 |
Q |
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| T |
44087574 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44087534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 44093036 - 44093076
Alignment:
| Q |
96 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
136 |
Q |
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| T |
44093036 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44093076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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