View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10975_low_5 (Length: 245)
Name: NF10975_low_5
Description: NF10975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10975_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 39227985 - 39228216
Alignment:
| Q |
14 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
113 |
Q |
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| T |
39227985 |
gacaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
39228084 |
T |
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| Q |
114 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaggtttgatatatctagtgacacaa |
213 |
Q |
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| T |
39228085 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatccagtgacacaa |
39228184 |
T |
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| Q |
214 |
cagaactattgtttgtgtcacattgaatacca |
245 |
Q |
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| T |
39228185 |
cagaactattgtttgtgtcacattgaatacca |
39228216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 25547184 - 25547412
Alignment:
| Q |
14 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
113 |
Q |
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|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547184 |
gacaccaagaggtagtgaacaattgaactcattgttgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
25547283 |
T |
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| Q |
114 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaggtttgatatatctagtgacacaa |
213 |
Q |
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| T |
25547284 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatctagtgacaaaa |
25547383 |
T |
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| Q |
214 |
cagaactattgtttgtgtcacattgaata |
242 |
Q |
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| T |
25547384 |
cagaactattgtttgtgtcacattgaata |
25547412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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