View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_high_11 (Length: 314)
Name: NF10976_high_11
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 25899082 - 25898819
Alignment:
| Q |
16 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899082 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
25898983 |
T |
|
| Q |
116 |
tctccaactttcttagctatatattctacttatagaactctatttcaacttgaactataatcacaattgcatcatggtcatttagcacactcctaaaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898982 |
tctccaactttcttagctatatattctacttatagaactctatttcaacttgaactataatcacaattgcatcatggtcatttagcacactcctaaaagt |
25898883 |
T |
|
| Q |
216 |
ttcaaattatcataacttaccgatttagttattcgatatttagttggttactaaagcatgttag |
279 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25898882 |
ttcaaattatcataacttaccgatttagttattcaatatttagttggttactaaagcatgttag |
25898819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 16488443 - 16488309
Alignment:
| Q |
16 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
115 |
Q |
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|||||||||||||||| |||||||||||||| | || |||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||| |
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| T |
16488443 |
ttttttactcataagtagaaatggaaattgtcttttatttttcagttagcaagcccaactatgggtaataggaaaacatgactggtaaagtgcacaatgt |
16488344 |
T |
|
| Q |
116 |
tctccaactttcttagctatatattctacttatag |
150 |
Q |
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||| ||||||| |||||||||||| ||||||||| |
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| T |
16488343 |
tctgcaacttttttagctatatatattacttatag |
16488309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 21814467 - 21814601
Alignment:
| Q |
16 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | || |||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||| |
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| T |
21814467 |
ttttttactcataagtagaaatggaaattgtcttttatttttcagttagcaagcccaactatgggtaataggaaaacatgactggtaaagtgcacaatgt |
21814566 |
T |
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| Q |
116 |
tctccaactttcttagctatatattctacttatag |
150 |
Q |
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||| ||||||| |||||||||||| ||||||||| |
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| T |
21814567 |
tctgcaacttttttagctatatatattacttatag |
21814601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 19461907 - 19461805
Alignment:
| Q |
16 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
115 |
Q |
| |
|
||||||| ||||||||||||||| || | | |||| |||| ||||||||| |||| ||| | ||| | |||||||||||||||||| |||||||| | |
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| T |
19461907 |
ttttttattcataagtggaaatgcaactcttctattgttttgcagttagcatacccatttacgggtaaaaagaaaacatgactgacaaaatgcacaatct |
19461808 |
T |
|
| Q |
116 |
tct |
118 |
Q |
| |
|
||| |
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|
| T |
19461807 |
tct |
19461805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 19559585 - 19559483
Alignment:
| Q |
16 |
ttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatgactgacaaagtgcacaatgt |
115 |
Q |
| |
|
||||||| ||||||||||||||| || | | |||| |||| ||||||||| |||| ||| | ||| | |||||||||||||||||| |||||||| | |
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| T |
19559585 |
ttttttattcataagtggaaatgcaactcttctattgttttgcagttagcatacccatttacgggtaaaaagaaaacatgactgacaaaatgcacaatct |
19559486 |
T |
|
| Q |
116 |
tct |
118 |
Q |
| |
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||| |
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|
| T |
19559485 |
tct |
19559483 |
T |
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