View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_high_14 (Length: 250)
Name: NF10976_high_14
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25295620 - 25295867
Alignment:
| Q |
1 |
caccccattatatcaatcaaccaggtttaactcaaattaataatcttatattgtggactcgtaccctctacagtgccaaaagaggaagaatcaatannnn |
100 |
Q |
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| T |
25295620 |
caccccattatatcaatccaccaggtttaactcaaattaataatct-atattgtggac----accctctacagtgccaaaagaggaagaatcaatatttt |
25295714 |
T |
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| Q |
101 |
nnnn--ggtgaaaagaagcattaatcata----atcctaatcatatgagtgaaca---ttttaatcattgctcattaaatcatacagaaatctcaagaat |
191 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25295715 |
ttttttggtgaaaagaagcattaatcatatataatcctaatcatatgagtgaacaatattttaatcattgctaattaaatcatacagaaatctcaagaat |
25295814 |
T |
|
| Q |
192 |
aacaacgtgataacatccctacaaaaatacaccaatccatctattcttctcac |
244 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25295815 |
aacaacttgataacatccctacaaaaatacaccaatccatctattcttttcac |
25295867 |
T |
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