View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_high_15 (Length: 250)
Name: NF10976_high_15
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 50580259 - 50580498
Alignment:
| Q |
11 |
cacagatgtaaaattcaaacacattatcagtaagttaacgacttaattattgtcataaatctatgcctgtatattatactacataccttgtttgttctaa |
110 |
Q |
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| T |
50580259 |
cacagatgtaaaattcaaacacattatcagtaagctaacgacttaattattgtcataaatctatgcctgtatattatactacataccttgtttgttctaa |
50580358 |
T |
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| Q |
111 |
agctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattcc |
210 |
Q |
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| T |
50580359 |
aggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattcc |
50580458 |
T |
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| Q |
211 |
aaccaactccgatgtaacactgtcgaagatttctctgtct |
250 |
Q |
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| T |
50580459 |
aaccaactccgatgtaacactgtcgaagatttctctgtct |
50580498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
| Q |
134 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
213 |
Q |
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| T |
11462908 |
tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac |
11462987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 1059453 - 1059313
Alignment:
| Q |
93 |
ataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagac |
192 |
Q |
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| T |
1059453 |
ataccttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaac |
1059354 |
T |
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| Q |
193 |
caatgtcttcttcattccaaccaactccgatgtaacactgt |
233 |
Q |
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| T |
1059353 |
caaagtcttcttcataccaactaattctgatgtaacactgt |
1059313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
| Q |
134 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac |
217 |
Q |
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| T |
45059076 |
tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac |
45058993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
| Q |
135 |
attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa |
212 |
Q |
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| T |
3893451 |
attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
| Q |
135 |
attcatgcatgacccaattacttttctctcctcgaggagctctgccttt |
183 |
Q |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctaccttt |
10317671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
| Q |
134 |
tattcatgcatgacccaattacttttctc |
162 |
Q |
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| T |
31606022 |
tattcatgcatgacccaattacttttctc |
31606050 |
T |
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