View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_high_16 (Length: 246)
Name: NF10976_high_16
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32967589 - 32967352
Alignment:
| Q |
1 |
gagtagatgacaaaaaagatgtatcgtcagtactggattaaagtctataatgttctatcgaactttttgactaagcaattcatctatatcagaaatgcat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32967589 |
gagtagat-acaaaaaagatgtatcgtcagtactggattaaagtctataatgttctatcgaacttttttactaagcaattcatctatatcagaaatgcat |
32967491 |
T |
|
| Q |
101 |
tgaaaatgataagctctctgagcgaaaaatgtgccagattttaataagatcaagaaaaattataaccatcataatttgtatcatacctggaaatcttgat |
200 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32967490 |
tgaaaatcataagctctctgagcgaaaaatgtgccagattctaataagatcaagaaaaattataaccattataatgtgtatcatacctggaaatcttgat |
32967391 |
T |
|
| Q |
201 |
acaaaaccacctctattttttatatcctcgtgttctgtg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32967390 |
acaaaaccacctctattttttatatcctcgtgttctgtg |
32967352 |
T |
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