View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10976_high_17 (Length: 240)
Name: NF10976_high_17
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_17 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 39969424 - 39969202
Alignment:
| Q |
18 |
aatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtagatgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39969424 |
aatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtagatgga |
39969325 |
T |
|
| Q |
118 |
tattgacatgttcccgtgcctacaaaatttaaacaagttaatacgatcatcaaagttctcaacaaccaaaagtagaaaaaagtagaatgaattgaataat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39969324 |
tattgacatgttcccgtgcctacaaaatttaaacaagttaatacgatcatcaaagttctcaacaaccaaaagtagaaaaaagtagaatgaattgaataat |
39969225 |
T |
|
| Q |
218 |
ttcatccttgtataaaaccttgt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39969224 |
ttcatccttgtataaaaccttgt |
39969202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University