View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10976_high_2 (Length: 615)
Name: NF10976_high_2
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 39395708 - 39396295
Alignment:
| Q |
1 |
atttgatgaagtggaggacgattcacctgattcagaaacacatgttgaaatgggaattcatgatgactttgatcatttagatgaatcacattttgatgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
39395708 |
atttgatgaagtggaggacgattcacctgattcagaaacacatgttgaaatgggaattcatgaagattttgatcatttagatgaatcacattttgatgat |
39395807 |
T |
|
| Q |
101 |
tctgaggctgatagaaacaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagnnnnnnnnnnnnnnnnnataataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39395808 |
tctgaggctgatagaaacaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagtactactactgctactaataataata |
39395907 |
T |
|
| Q |
201 |
cccgaaaagaacttcccaatgaagaacatctacaaacgtaatgcaaattacacagtgactaaatacaattagactgtaatattgttcatattgttttact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39395908 |
cccgaaaagaacttcccaatgaagaacatctacaaacgtaatgcaaattacacagtgactaaatacaattagactgtaatactgttcatattgttttact |
39396007 |
T |
|
| Q |
301 |
ttgtgcatttgtttaatgtgtacataatttttgtttnnnnnnnnntgtgtacatagtttcacagattatacgtacacctattttgagaccctatttcgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396008 |
ttgtgcatttgtttaatgtgtacataatttttgtttaaaaaaaa-tgtgtacataatttcacagattatacgtacacctattttgagaccctatttcgtg |
39396106 |
T |
|
| Q |
401 |
tctgtttgtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaactaaaacaatcatttagaccacctaag |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396107 |
tctgttggtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaactaaaacaatcatttagaccacctaag |
39396206 |
T |
|
| Q |
501 |
acgaattagaaaatactctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgatacgaaaaagtaccaca |
589 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396207 |
acgaattagaaaataccctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgatacgaaaaagtaccaca |
39396295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University