View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10976_high_5 (Length: 495)

Name: NF10976_high_5
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10976_high_5
NF10976_high_5
[»] chr4 (4 HSPs)
chr4 (199-309)||(53350590-53350698)
chr4 (330-404)||(53350424-53350495)
chr4 (17-119)||(53350799-53350900)
chr4 (403-484)||(53350291-53350372)
[»] chr5 (14 HSPs)
chr5 (136-188)||(26032483-26032535)
chr5 (47-91)||(38456899-38456943)
chr5 (46-88)||(38171901-38171943)
chr5 (46-88)||(38181535-38181577)
chr5 (46-88)||(38189554-38189596)
chr5 (46-88)||(38208761-38208803)
chr5 (46-88)||(38216779-38216821)
chr5 (46-91)||(26032558-26032603)
chr5 (139-188)||(38456970-38457019)
chr5 (136-188)||(38171822-38171874)
chr5 (136-188)||(38181606-38181658)
chr5 (136-188)||(38189473-38189525)
chr5 (136-188)||(38208832-38208884)
chr5 (136-188)||(38216698-38216750)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 53350698 - 53350590
Alignment:
Q  199 attactcgttttggtcttagaactgtggctgagagaaaaatcatggttatccttctaacatttgtttggaggtaactatatataggacagaatatgacaa 298  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||  |||| |||||||| | ||||||    
T  53350698 attactctttttggtcttagaactgtggctgagaggaaaatcatggttatccttctaacattattttggaggtaac--tatacaggacagagtgtgacaa 53350601  T
Q  299 aactgatgtat 309  Q
    |||||||||||    
T  53350600 aactgatgtat 53350590  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 53350495 - 53350424
Alignment:
Q  330 aattactcaaatttgaaaaattattgttcacatattgtatatttttcagcccctccaagaaaaaagttcctagct 404  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53350495 aattactcaaatttgaaaaatt---gttcacatattgtatatttttcagcccctccaaggaaaaagttcctagct 53350424  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 53350900 - 53350799
Alignment:
Q  17 aacagtaacttgcatgacaagcttccattcgatataaaaagcttatagtgtttgcaacacaacttttctgtatttagtgttttttcttctgagaattgag 116  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||  ||||||||  | ||||||||| ||||||||| |||||  ||||||||||||||    
T  53350900 aacagtaacttgcatgacaagctcccacacgatgtaaaaagcttacggtgtttgcgtcgcaacttttcagtatttagt-tttttctttctgagaattgag 53350802  T
Q  117 ttg 119  Q
    |||    
T  53350801 ttg 53350799  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 53350372 - 53350291
Alignment:
Q  403 ctttcatgttcttagcttttgccattgttctctttgaactcttgtttttgttttgagtccttgccctgctcattgtgtctgt 484  Q
    |||||||||||||   |||||| |||||||||||||||||||||||| |||||||||||| | | |||||| ||||||||||    
T  53350372 ctttcatgttcttgcattttgctattgttctctttgaactcttgtttctgttttgagtccctcctctgctcgttgtgtctgt 53350291  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 26032535 - 26032483
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  26032535 gtctaaacgatgttatttgacagatgtattaaattaattctactttatgcaat 26032483  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 38456899 - 38456943
Alignment:
Q  47 gatataaaaagcttatagtgtttgcaacacaacttttctgtattt 91  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  38456899 gatataaaaagcttatattgtttgcaacacaacttttctgtattt 38456943  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 38171943 - 38171901
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38171943 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38171901  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 38181535 - 38181577
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38181535 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38181577  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 38189596 - 38189554
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38189596 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38189554  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 38208761 - 38208803
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38208761 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38208803  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 38216821 - 38216779
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38216821 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38216779  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 26032603 - 26032558
Alignment:
Q  46 cgatataaaaagcttatagtgtttgcaacacaacttttctgtattt 91  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  26032603 cgatataaaaagcttatagtgtttgcaacacaatgtttctgtattt 26032558  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 38456970 - 38457019
Alignment:
Q  139 taaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  38456970 taaacgatgttatttgacagatatattaaattaattctactttatgcaat 38457019  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 38171874 - 38171822
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||||||    
T  38171874 gtctaaacgatgttatttgacaaatctattaagttaattccactttatgcaat 38171822  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 38181606 - 38181658
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38181606 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38181658  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 38189525 - 38189473
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38189525 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38189473  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 38208832 - 38208884
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38208832 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38208884  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 38216750 - 38216698
Alignment:
Q  136 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 188  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38216750 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38216698  T

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