View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10976_high_6 (Length: 426)
Name: NF10976_high_6
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 32967689 - 32968087
Alignment:
| Q |
12 |
agagaagataagtgaagatgcagaatttgttatattagccagtgatggattgtggaaggtcagtttttgataaatgaagcataatgcaaataccttatgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32967689 |
agagaagataagtgaagatgcagaatttgttatattagccagtgatggattgtggaaggtcagtttttgataaatgaagcataatgcaaataccttatgg |
32967788 |
T |
|
| Q |
112 |
atatatatatttttaatactaaggaaataaggattagtgttggaccatgtatgcatgcatatttaactagggtttaaatctgttaatacatatatcattc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32967789 |
atatatatatttttaatactaaggaaataaggattagtgttggaccatgtatgcatgcatatttaactagggtttaaatctgttaatacatatatcattc |
32967888 |
T |
|
| Q |
212 |
caggtaatgtcaaatcaagaagcagttgattgtatcaaagatataaaggatgctcggtcgtcagcaaagcgcctcactgaagaagcagttaacaggaaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32967889 |
caggtaatgtcaaatcaagaagcagttgattgtatcaaagatataaaggatgctcggtcgtcagcaaagcgcctcactgaagaagcagttaacaggaaaa |
32967988 |
T |
|
| Q |
312 |
gcagcgacgatatctctgtcatcgttgtgaaacttcagtgatcacaattcacaagactcattactttgatcaataaacatccaagtgtaacatatacct |
410 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32967989 |
gcagcgacgatatctctgtcattgttgtgaaacttcagtgatcacaattcacaagactcattactttgatcaataaacatccaagtgtaacatatacct |
32968087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 22195854 - 22195949
Alignment:
| Q |
213 |
aggtaatgtcaaatcaagaagcagttgattgtatcaaagatataaaggatgctcggtcgtcagcaaagcgcctcactgaagaagcagttaacagga |
308 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||| || ||||||||||| ||||||||| || ||||||||||| ||||||||| |
|
|
| T |
22195854 |
aggtcatgtcaaatcaagaagcagtggatgcaatcaaagatatcaaagatgctcggtctgcagcaaagcatcttactgaagaagcgcttaacagga |
22195949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University