View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_10 (Length: 385)
Name: NF10976_low_10
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 50580501 - 50580636
Alignment:
| Q |
1 |
ccctgtggtcttccagtatccggtgtttgttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttct |
100 |
Q |
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| T |
50580501 |
ccctgtggtcttccagtatccggtgtttgttgctcgattcgttctcacaccggttggatatttacgatctctcatattgaaaaagtaccattccttttct |
50580600 |
T |
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| Q |
101 |
cccatctttgccttccctaaaattattcatgcacgat |
137 |
Q |
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| T |
50580601 |
cccatctttgccttccctaaaa-tattcatgcacgat |
50580636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 50580661 - 50580750
Alignment:
| Q |
282 |
gtacgcaattttttctttcttaattgtttaatgagaatatcaacatcatatgataatgtttacaactatatatagtatgtatgcacataa |
371 |
Q |
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| T |
50580661 |
gtacgcaattttttctttcttaattgtttaatgagaatatcaacatcattttataatgtttacaactatatatagtatgtatgcacataa |
50580750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1059293 - 1059175
Alignment:
| Q |
1 |
ccctgtggtcttccagtatccggtgtttgttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttct |
100 |
Q |
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| T |
1059293 |
ccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatatttacgatctcttagactgaagaagtaccattcttttgta |
1059194 |
T |
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| Q |
101 |
cccatctttgccttcccta |
119 |
Q |
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| T |
1059193 |
cccatcttggccttcccta |
1059175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 32991129 - 32991047
Alignment:
| Q |
29 |
gttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgc |
111 |
Q |
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| T |
32991129 |
gttgctctatttgttctcatacctgttggatattttctatctttctgacaaaaaaagtaccattctttctctcccatctttgc |
32991047 |
T |
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