View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10976_low_11 (Length: 369)

Name: NF10976_low_11
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10976_low_11
NF10976_low_11
[»] chr6 (14 HSPs)
chr6 (1-260)||(2187054-2187313)
chr6 (18-244)||(2172105-2172337)
chr6 (294-353)||(2186961-2187020)
chr6 (294-342)||(2172380-2172428)
chr6 (69-244)||(28327755-28327930)
chr6 (69-244)||(28505391-28505566)
chr6 (138-216)||(29470467-29470545)
chr6 (90-146)||(28141894-28141950)
chr6 (117-146)||(27590835-27590864)
chr6 (117-146)||(27696443-27696472)
chr6 (123-163)||(26658241-26658281)
chr6 (123-163)||(26764212-26764252)
chr6 (117-145)||(27675432-27675460)
chr6 (117-145)||(27716352-27716380)
[»] scaffold0286 (2 HSPs)
scaffold0286 (18-244)||(21706-21938)
scaffold0286 (294-342)||(21615-21663)
[»] chr1 (1 HSPs)
chr1 (115-145)||(28125543-28125573)
[»] scaffold0349 (1 HSPs)
scaffold0349 (117-145)||(15565-15593)
[»] scaffold0019 (1 HSPs)
scaffold0019 (88-244)||(56111-56267)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2187313 - 2187054
Alignment:
Q  1 tgagattattacaatgtgaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187313 tgagattattacaatgtgaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagatttt 2187214  T
Q  101 gagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagagaccagatatgtcaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2187213 gagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgacagtatttccaaatttaagagaccagatatgtcaagt 2187114  T
Q  201 atctgtgttaaagattgattgtggtctaaatttaactctctcatgcacaagaacttctgc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187113 atctgtgttaaagattgattgtggtctaaatttaactctctcatgcacaagaacttctgc 2187054  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 2172105 - 2172337
Alignment:
Q  18 gaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacc 117  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||  | |||||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  2172105 gaaagttcaagttttggaagagatgtcaaatttatgggtggaaaacttgtaagcttgatgcaaccaataacgttcaagattttgagtttattcaagaacc 2172204  T
Q  118 caatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagag------accagatatgtcaagtatctgtgttaa 211  Q
         |||| ||||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||      ||||||| |||||| ||||||||||||    
T  2172205 tttcagaatcgtgaaatgtaattaaattccaacaatctcgaatcgaaagtatttccaaatttaagagaacagaaccagatttgtcaactatctgtgttaa 2172304  T
Q  212 agattgattgtggtctaaatttaactctctcat 244  Q
    ||||||| ||| |||||||||||||||||||||    
T  2172305 agattgactgtagtctaaatttaactctctcat 2172337  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 2187020 - 2186961
Alignment:
Q  294 tgagtaatcttacagtagtgagttggtacacaagatgaggaaaatgaaaacattacacct 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187020 tgagtaatcttacagtagtgagttggtacacaagatgaggaaaatgaaaacattacacct 2186961  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 2172380 - 2172428
Alignment:
Q  294 tgagtaatcttacagtagtgagttggtacacaagatgaggaaaatgaaa 342  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  2172380 tgagtaatcttaaagtagtgagttggaacataagatgaggaaaatgaaa 2172428  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 28327930 - 28327755
Alignment:
Q  69 agcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagta 168  Q
    ||||||||||| |||||| ||||||||||||  |||||||| |  ||||||| |||  ||||||||  ||||||||||  |||| || ||||||| | ||    
T  28327930 agcttgctgcaaccagtagcgttcaagatttcaagtttatttaggaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaata 28327831  T
Q  169 tttccaaatttaagagaccagatatgtcaagtatctgtgttaaagattgattgtggtctaaatttaactctctcat 244  Q
    |||| ||||||  ||||   || | |||  ||||| |||||||| |||||   | ||||| |||||||||||||||    
T  28327830 tttctaaatttgggagattggagacgtcgtgtatccgtgttaaaaattgacatttgtctagatttaactctctcat 28327755  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 28505566 - 28505391
Alignment:
Q  69 agcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagta 168  Q
    ||||||||||| |||||| ||||||||||||  |||||||| |  ||||||| |||  ||||||||  ||||||||||  |||| || ||||||| | ||    
T  28505566 agcttgctgcaaccagtagcgttcaagatttcaagtttatttaggaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaata 28505467  T
Q  169 tttccaaatttaagagaccagatatgtcaagtatctgtgttaaagattgattgtggtctaaatttaactctctcat 244  Q
    |||| ||||||  ||||   || | |||  ||||| |||||||| |||||   | ||||| |||||||||||||||    
T  28505466 tttctaaatttgggagattggagacgtcgtgtatccgtgttaaaaattgacatttgtctagatttaactctctcat 28505391  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 29470545 - 29470467
Alignment:
Q  138 attaaattcgaacaatctcgaaatgatagtatttccaaatttaagagaccagatatgtcaagtatctgtgttaaagatt 216  Q
    |||||||||  ||||||| |||| || |||  ||| ||||||| |||||||||||||||| ||||| ||||||||||||    
T  29470545 attaaattcacacaatcttgaaaagaaagttcttctaaatttacgagaccagatatgtcaggtatccgtgttaaagatt 29470467  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 28141950 - 28141894
Alignment:
Q  90 ttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattc 146  Q
    |||||||||||||||||||| || |||||||  |||||||| | |||||||||||||    
T  28141950 ttcaagattttgagtttatttaataacccaacagaattgtgtactgtaattaaattc 28141894  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 27590835 - 27590864
Alignment:
Q  117 ccaatcgaattgtgaattgtaattaaattc 146  Q
    ||||||||||||||||||||||||||||||    
T  27590835 ccaatcgaattgtgaattgtaattaaattc 27590864  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 27696443 - 27696472
Alignment:
Q  117 ccaatcgaattgtgaattgtaattaaattc 146  Q
    ||||||||||||||||||||||||||||||    
T  27696443 ccaatcgaattgtgaattgtaattaaattc 27696472  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 26658281 - 26658241
Alignment:
Q  123 gaattgtgaattgtaattaaattcgaacaatctcgaaatga 163  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  26658281 gaattgtgaattgtaattaaattagcacaatttcgaaatga 26658241  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 26764252 - 26764212
Alignment:
Q  123 gaattgtgaattgtaattaaattcgaacaatctcgaaatga 163  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  26764252 gaattgtgaattgtaattaaattagcacaatttcgaaatga 26764212  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 27675432 - 27675460
Alignment:
Q  117 ccaatcgaattgtgaattgtaattaaatt 145  Q
    |||||||||||||||||||||||||||||    
T  27675432 ccaatcgaattgtgaattgtaattaaatt 27675460  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 27716352 - 27716380
Alignment:
Q  117 ccaatcgaattgtgaattgtaattaaatt 145  Q
    |||||||||||||||||||||||||||||    
T  27716352 ccaatcgaattgtgaattgtaattaaatt 27716380  T

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Target: scaffold0286 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 21938 - 21706
Alignment:
Q  18 gaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacc 117  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||  | |||||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  21938 gaaagttcaagttttggaagagatgtcaaatttatgggtggaaaacttgtaagcttgatgcaaccaataacgttcaagattttgagtttattcaagaacc 21839  T
Q  118 caatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagag------accagatatgtcaagtatctgtgttaa 211  Q
         |||| ||||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||      ||||||| |||||| ||||||||||||    
T  21838 tttcagaatcgtgaaatgtaattaaattccaacaatctcgaatcgaaagtatttccaaatttaagagaacagaaccagatttgtcaactatctgtgttaa 21739  T
Q  212 agattgattgtggtctaaatttaactctctcat 244  Q
    ||||||| ||| |||||||||||||||||||||    
T  21738 agattgactgtagtctaaatttaactctctcat 21706  T

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Target: scaffold0286; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 21663 - 21615
Alignment:
Q  294 tgagtaatcttacagtagtgagttggtacacaagatgaggaaaatgaaa 342  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  21663 tgagtaatcttaaagtagtgagttggaacataagatgaggaaaatgaaa 21615  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 28125543 - 28125573
Alignment:
Q  115 acccaatcgaattgtgaattgtaattaaatt 145  Q
    |||||||||||||||||||||||||||||||    
T  28125543 acccaatcgaattgtgaattgtaattaaatt 28125573  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 15593 - 15565
Alignment:
Q  117 ccaatcgaattgtgaattgtaattaaatt 145  Q
    |||||||||||||||||||||||||||||    
T  15593 ccaatcgaattgtgaattgtaattaaatt 15565  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 56111 - 56267
Alignment:
Q  88 cgttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagagacc 187  Q
    ||||||||||||  |||||||| |  ||||| |  || |||||||||  ||||||||||  ||||| |  |||||| | |||||| ||||||  |||| |    
T  56111 cgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatc 56210  T
Q  188 agatatgtcaagtatctgtgttaaagattgattgtggtctaaatttaactctctcat 244  Q
     || |||||| ||||| |||||||| |||||   | ||||| |||||||||||||||    
T  56211 ggagatgtcatgtatccgtgttaaatattgacatttgtctagatttaactctctcat 56267  T

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