View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_12 (Length: 330)
Name: NF10976_low_12
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 376522 - 376820
Alignment:
| Q |
14 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
113 |
Q |
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| T |
376522 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
376621 |
T |
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| Q |
114 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
213 |
Q |
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| T |
376622 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
376721 |
T |
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| Q |
214 |
tcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgt |
312 |
Q |
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| T |
376722 |
tcttcactctatttttaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgt |
376820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 347964 - 347676
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| |
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| T |
347964 |
gtgagttcatgggaccttggtttaccaacatgaactatttggttactagtgaccctatgaacgtgcatcacatgatgagcaagtgttttgataattatgt |
347865 |
T |
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| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
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| T |
347864 |
aaagggtcaagaatttcatgagatttttgaagcctttggagatggaatattcaacgctgattcggagaaatggaaatacaataggtctctttttcactct |
347765 |
T |
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| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgt |
312 |
Q |
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| T |
347764 |
attttcaaacaaagagattttgaattgtttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgt |
347676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 356623 - 356335
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| | |||||| ||||||||||||||| |
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| T |
356623 |
gtgagttcatgggaccttggtttaccagcatgaactatttggtcactagtgaccccatcaacttgcatcacatgttaagcaagtcttttgacaattatgt |
356524 |
T |
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| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
356523 |
taagggtcatgaatatcatgagatatttgaagcctttggagatggaatattcaacactgattcggagacatggaaatacaataggtctctttttcactct |
356424 |
T |
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| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgt |
312 |
Q |
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||||| ||| |||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
356423 |
attttgaaaataagagattttgaaatgtttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgt |
356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 336917 - 337000
Alignment:
| Q |
193 |
atggaaatataataggtctcttcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaa |
276 |
Q |
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||||||||| |||||| |||||| || | | | ||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
336917 |
atggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaa |
337000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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