View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_14 (Length: 261)
Name: NF10976_low_14
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_14 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 30502626 - 30502383
Alignment:
| Q |
18 |
ctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattcttacaaactcaaaatattgtatttccaatgatgttaagctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30502626 |
ctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattcttacaaactcaaaatattgtatttccaatgatgttaagctc |
30502527 |
T |
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| Q |
118 |
cgcggttacgacattacttcatcttcctctatgttggtatatggtatacaagtctggatttggcagcggaggcgctgccatagcaagttctatatcttat |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
30502526 |
cgcggttacgacattacttcatcttcctttatgttggtatatggtatacaagtctggatttggtagcggaggcgctgccatagcaagttctatatcctat |
30502427 |
T |
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| Q |
218 |
tgggtcaatgttatcatactctcactctatgtaaaattttctcc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30502426 |
tgggtcaatgttatcatactctcactctatgtaaaattttctcc |
30502383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 30484814 - 30484571
Alignment:
| Q |
18 |
ctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattcttacaaactcaaaatattgtatttccaatgatgttaagctc |
117 |
Q |
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|||||||||||||||| | |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
30484814 |
ctaagttaatggttccctgcctttttgcttacggtcttctacaatgtctcaacagattcttacagactcaaaatattgtatttccaatgatgtttagctc |
30484715 |
T |
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| Q |
118 |
cgcggttacgacattacttcatcttcctctatgttggtatatggtatacaagtctggatttggcagcggaggcgctgccatagcaagttctatatcttat |
217 |
Q |
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| T |
30484714 |
cgctgttacaacattacttcatcttcctctatgttggtttatggtatacaaatctggattaggtagtggaggcgctgccatagcaagttctatatcctat |
30484615 |
T |
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| Q |
218 |
tgggtcaatgttatcatactctcactctatgtaaaattttctcc |
261 |
Q |
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| T |
30484614 |
tggctgaatgttatcatactcgcactctatgtcaagttttctcc |
30484571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 30512271 - 30512030
Alignment:
| Q |
20 |
aagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattcttacaaactcaaaatattgtatttccaatgatgttaagctccg |
119 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
30512271 |
aagttaatggttccatgcctttttgcttatggtcttctacaatgcctcaacagattcttacagactcaaaatattgtatttccaatgatgtttagctctg |
30512172 |
T |
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| Q |
120 |
cggttacgacattacttcatcttcctctatgttggtatatggtatacaagtctggatttggcagcggaggcgctgccatagcaagttctatatcttattg |
219 |
Q |
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|| | ||||| ||||||||||||||| | || |||| |||||||||||| |||||||| || ||| |||| ||||||||||||| ||||||||| ||||| |
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| T |
30512171 |
cgatgacgacgttacttcatcttcctatttgctggtttatggtatacaaatctggattaggtagcagaggtgctgccatagcaaattctatatcctattg |
30512072 |
T |
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| Q |
220 |
ggtcaatgttatcatactctcactctatgtaaaattttctcc |
261 |
Q |
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| |||| |||| ||||||| |||||||||| || |||||||| |
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| T |
30512071 |
gatcaacgttaccatactcgcactctatgtcaagttttctcc |
30512030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 24707516 - 24707755
Alignment:
| Q |
22 |
gttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattcttacaaactcaaaatattgtatttccaatgatgttaagctccgcg |
121 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |
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| T |
24707516 |
gttaatggttccatccctttttgcgtatggtcttctacaatgcctcaacagattcttacaggctcaaaatattgtatttccaatgatgttaagctctgtg |
24707615 |
T |
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| Q |
122 |
gttacgacattacttcatcttcctctatgttggtatatggtatacaagtctggatttggcagcggaggcgctgccatagcaagttctatatcttattggg |
221 |
Q |
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| T |
24707616 |
gtgacaactttatttcatcttcctgtttgttggtttatggtatacaagtcaggattaggtagcggaggggccgccatagcaaattctatatcctattggc |
24707715 |
T |
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| Q |
222 |
tcaatgttatcatactctcactctatgtaaaattttctcc |
261 |
Q |
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||||||||| ||||||| ||||||||| || |||||||| |
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| T |
24707716 |
tcaatgttaccatactcatactctatgtcaagttttctcc |
24707755 |
T |
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