View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_15 (Length: 252)
Name: NF10976_low_15
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 16790991 - 16791136
Alignment:
| Q |
18 |
gttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---tgtaatttaa |
114 |
Q |
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| T |
16790991 |
gttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaatttaa |
16791090 |
T |
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| Q |
115 |
atactttagtggcaagacttcaccttcgagaacaataaaggtcagt |
160 |
Q |
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| T |
16791091 |
atactttagtggcaagacttcaccttcaagaacaataaaggtcagt |
16791136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 16792903 - 16793045
Alignment:
| Q |
18 |
gttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attgtaatttaa |
114 |
Q |
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| T |
16792903 |
gttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatttaa |
16793002 |
T |
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| Q |
115 |
atactttagtggcaagacttcaccttcgagaacaataaaggtc |
157 |
Q |
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| T |
16793003 |
atactttagtggcaagacttcgccttcgagaacaataaaggtc |
16793045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 16791184 - 16791272
Alignment:
| Q |
159 |
gtctatggcaacttcatgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatca |
247 |
Q |
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| T |
16791184 |
gtctatggcaacttcttgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatca |
16791272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 16617269 - 16617353
Alignment:
| Q |
18 |
gttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
102 |
Q |
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| T |
16617269 |
gttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata |
16617353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 16629612 - 16629734
Alignment:
| Q |
37 |
gcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaaatactttagtggcaagact |
133 |
Q |
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| T |
16629612 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16629711 |
T |
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| Q |
134 |
tcaccttcgagaacaataaaggt |
156 |
Q |
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| T |
16629712 |
ccaccttcgggactaataaaggt |
16629734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 16638493 - 16638615
Alignment:
| Q |
37 |
gcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaaatactttagtggcaagact |
133 |
Q |
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| T |
16638493 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16638592 |
T |
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| Q |
134 |
tcaccttcgagaacaataaaggt |
156 |
Q |
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| T |
16638593 |
ccaccttcgggactaataaaggt |
16638615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 16629299 - 16629369
Alignment:
| Q |
32 |
gcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
102 |
Q |
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| T |
16629299 |
gcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16629369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 16638180 - 16638250
Alignment:
| Q |
32 |
gcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
102 |
Q |
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| T |
16638180 |
gcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16638250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15110444 - 15110408
Alignment:
| Q |
18 |
gttgcaacaaagctgcgaggcattttctatcctgtgg |
54 |
Q |
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|||||||||||||||||| |||||||| ||||||||| |
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| T |
15110444 |
gttgcaacaaagctgcgatgcattttccatcctgtgg |
15110408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 38877746 - 38877856
Alignment:
| Q |
18 |
gttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaa |
114 |
Q |
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||||||||||||||| ||||||||||| || |||||| | |||| ||| ||||||| |||||||| ||||| |||||||||| || ||||| |||| |
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| T |
38877746 |
gttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaaattaa |
38877845 |
T |
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| Q |
115 |
atactttagtg |
125 |
Q |
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| T |
38877846 |
acactttagtg |
38877856 |
T |
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