View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10976_low_16 (Length: 250)

Name: NF10976_low_16
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10976_low_16
NF10976_low_16
[»] chr5 (2 HSPs)
chr5 (153-250)||(39969082-39969179)
chr5 (15-105)||(39968945-39969035)
[»] chr8 (1 HSPs)
chr8 (15-89)||(1028748-1028822)
[»] chr7 (1 HSPs)
chr7 (20-88)||(13054631-13054699)
[»] chr4 (1 HSPs)
chr4 (22-77)||(35010398-35010453)
[»] chr6 (2 HSPs)
chr6 (22-83)||(21023695-21023756)
chr6 (29-89)||(12654500-12654560)
[»] chr2 (1 HSPs)
chr2 (41-89)||(44287848-44287896)
[»] chr1 (1 HSPs)
chr1 (11-83)||(8757283-8757355)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 39969082 - 39969179
Alignment:
Q  153 atcttaaccctccggttttgataatcataaattcagccgaaaagtaaataaaaattgatcaagattgtttccgttaggattaagatttgaactcattt 250  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||||||    
T  39969082 atcttaaccctccggttttgataatcataaattcatccgaaaagtaaataaaaaaagatcaagattgtttcagtttggattaagatttgaactcattt 39969179  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 39968945 - 39969035
Alignment:
Q  15 gacattatgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaatttagcccagtggctacttgacc 105  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  39968945 gacattatgtgtaggagctgaggtttgaactctggatttcccacttctccacacataatgtgtgcgaatttagcctagtggctacttgacc 39969035  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 1028748 - 1028822
Alignment:
Q  15 gacattatgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaatttagcc 89  Q
    ||||||||||||||| ||||||||| |||||||||||| | ||||||| || ||||| |||||| |||| |||||    
T  1028748 gacattatgtgcaggggctgaggttcgaactccggattcttcacttcttcatacataatgtgtgtgaatctagcc 1028822  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 13054631 - 13054699
Alignment:
Q  20 tatgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaatttagc 88  Q
    |||||||||| || | |||| |||| || ||||| ||||||||||||||||| ||||||||||| ||||    
T  13054631 tatgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtgcgaatctagc 13054699  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35010453 - 35010398
Alignment:
Q  22 tgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgt 77  Q
    ||||||||||  | |||| ||||||||||||| ||||||||||||||||| |||||    
T  35010453 tgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgtgt 35010398  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 21023756 - 21023695
Alignment:
Q  22 tgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaat 83  Q
    |||| |||| ||||| || |||| ||||||| |||||||||||||||||| |||||| ||||    
T  21023756 tgtgtaggaactgagattcgaaccccggattctccacttctccacacataatgtgtgtgaat 21023695  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 12654560 - 12654500
Alignment:
Q  29 gagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaatttagcc 89  Q
    ||||||||||| ||||||  |||||||||||| | |||||||| |||||| |||| |||||    
T  12654560 gagctgaggttcgaactctagattttccactttttcacacataatgtgtgtgaatctagcc 12654500  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 44287848 - 44287896
Alignment:
Q  41 gaactccggattttccacttctccacacatattgtgtgcgaatttagcc 89  Q
    ||||||||||||  ||||||||||||||||| |||||| |||| |||||    
T  44287848 gaactccggattccccacttctccacacataatgtgtgtgaatctagcc 44287896  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 8757355 - 8757283
Alignment:
Q  11 cagagacattatgtgcaggagctgaggtttgaactccggattttccacttctccacacatattgtgtgcgaat 83  Q
    ||||||||||||||||||| || | |||| |||| | |||||  |||| |||||||||||| |||||| ||||    
T  8757355 cagagacattatgtgcaggggccggggttcgaaccctggattccccacgtctccacacataatgtgtgtgaat 8757283  T

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