View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_4 (Length: 509)
Name: NF10976_low_4
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 7141526 - 7141214
Alignment:
| Q |
17 |
tctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtcttaattcagcttgtgccttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141526 |
tctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtcttaattcagcttgtgccttct |
7141427 |
T |
|
| Q |
117 |
tcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141426 |
ccctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaag |
7141327 |
T |
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| Q |
217 |
aacatgtatagaattcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaatagg |
316 |
Q |
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| T |
7141326 |
aacatgtatagaattcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaatagg |
7141227 |
T |
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| Q |
317 |
aaattagggttat |
329 |
Q |
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||||||||||||| |
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| T |
7141226 |
aaattagggttat |
7141214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 355 - 494
Target Start/End: Complemental strand, 7141216 - 7141077
Alignment:
| Q |
355 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcc |
454 |
Q |
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| T |
7141216 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatcc |
7141117 |
T |
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| Q |
455 |
acaagatcttccttctcaatttcactcttgttaccttcat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
7141116 |
acaagatcttccttctcaatttcactcttgttaccttcat |
7141077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 7154296 - 7154105
Alignment:
| Q |
17 |
tctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtcttaattcagcttgtgccttct |
116 |
Q |
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||||||||||||||||| |||||| |||||| | || ||||| |||| |||||| || ||| || |||||||||| ||||| |||||||||||| || | |
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| T |
7154296 |
tctttgatcactaacttaaagtaagttagttcatttagatcagattcagatattattttctttcctttgaatgcttctcttagttcagcttgtgcttttt |
7154197 |
T |
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| Q |
117 |
tcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaat |
208 |
Q |
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| T |
7154196 |
ctctcacacttggatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcagttccggcaacaaatacgtcctgaaat |
7154105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 478
Target Start/End: Complemental strand, 7153046 - 7152924
Alignment:
| Q |
356 |
ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcca |
455 |
Q |
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||||||| | ||| ||||||||||||||||||||||||||||||| |||| | || || ||||||| | ||||||||||||||| |||||||||||| | |
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| T |
7153046 |
ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatcta |
7152947 |
T |
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| Q |
456 |
caagatcttccttctcaatttca |
478 |
Q |
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||||||||| || |||| |||| |
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| T |
7152946 |
gaagatcttcgttatcaacttca |
7152924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 7131732 - 7131652
Alignment:
| Q |
87 |
atgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttg |
167 |
Q |
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|||||| ||||| ||||||||||||||| ||| |||| ||||| |||||||||| ||||||||| |||||| ||||||||| |
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| T |
7131732 |
atgcttctcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgttg |
7131652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 7130839 - 7130752
Alignment:
| Q |
378 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
465 |
Q |
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| T |
7130839 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 12425455 - 12425604
Alignment:
| Q |
17 |
tctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtcttaattcagcttgtgccttct |
116 |
Q |
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|
||||||||||||||||| ||||| | ||||| | || |||| | ||||||||| | |||||| || | |||| ||||| ||||||||||||||||| |
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| T |
12425455 |
tctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctcttatttcagcttgtgccttct |
12425554 |
T |
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| Q |
117 |
tcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
166 |
Q |
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|| |||||||||| |||||||| | |||||||||||||| ||||||||| |
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| T |
12425555 |
tcatcactcttgggtttttcattaactctgacatagcccactctattgtt |
12425604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 12268153 - 12268081
Alignment:
| Q |
94 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
166 |
Q |
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||||| |||||||||||| ||| |||||||||| || |||||||| | |||||||||||||| ||||||||| |
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| T |
12268153 |
tcttatttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaatctattgtt |
12268081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 12438646 - 12438728
Alignment:
| Q |
122 |
actcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctg |
204 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||||||| ||||| | |||||| || ||||||||| ||||| |||||| |
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| T |
12438646 |
actcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg |
12438728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 55958761 - 55958833
Alignment:
| Q |
94 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
166 |
Q |
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||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||||| |
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| T |
55958761 |
tcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt |
55958833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 55955200 - 55955274
Alignment:
| Q |
89 |
gcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctatt |
163 |
Q |
| |
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|||| ||||| ||| | |||||| |||||| ||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
55955200 |
gcttctcttatttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctatt |
55955274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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