View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_7 (Length: 426)
Name: NF10976_low_7
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 419
Target Start/End: Original strand, 16791282 - 16791701
Alignment:
| Q |
4 |
ttgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcatttgaactcattcattatgataggaaaatgccctcaagttgtggta |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16791282 |
ttgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcacttgaacacattcattatgataggaaaatgccctcaagttgtggta |
16791381 |
T |
|
| Q |
104 |
atctttggnnnnnnnnncttctaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa |
203 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16791382 |
atctttggttttttttt-ttccaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa |
16791480 |
T |
|
| Q |
204 |
caatcgattctc-----tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaa |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
16791481 |
caatcgattctcgactatgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccatcgaacaaagtgaagggtcacgtattaaaa |
16791580 |
T |
|
| Q |
299 |
tcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgattttatatactattttcaactatttgcatt |
398 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16791581 |
tcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgattttatattctattttcaactatttgcatt |
16791680 |
T |
|
| Q |
399 |
gattattttgattttcatctc |
419 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16791681 |
gattattttgattttcatctc |
16791701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 131 - 419
Target Start/End: Original strand, 16790002 - 16790295
Alignment:
| Q |
131 |
tgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaa-cataaacaatcgatt------ctctgagatgg |
223 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||| ||||||| || |||||||| |
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| T |
16790002 |
tgaaatctacgagtatgtcattattttctc--acttcttgcaagaatcatatagtggaaataaaaaaacataaacgatcgattgtttgactatgagatgg |
16790099 |
T |
|
| Q |
224 |
ttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaa |
323 |
Q |
| |
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|||| ||||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||| | |
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| T |
16790100 |
ttattgctgaaaaggaaaatgttgaaagtgcgctaggagtagcgaccgaacatagtgaaggatcaattgttaaaatcatgtacaatgcagtgactatcga |
16790199 |
T |
|
| Q |
324 |
tcggaaccacgtatctcacttcacttatgataaaaaggtaagtgattttatatactattttcaactatttgcattgattattttgattttcatctc |
419 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16790200 |
tcagaaccttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaactatttgcattgaatattttgattttcatctc |
16790295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 216 - 419
Target Start/End: Complemental strand, 16616983 - 16616780
Alignment:
| Q |
216 |
tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg |
315 |
Q |
| |
|
|||| ||||||||||| ||||||||| | ||||||||| | | |||||||| |||||||||||||||||| |||| | ||||| ||||||||||||||| |
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| T |
16616983 |
tgaggtggttatcgctaaaaaggaaattgttgaaagtgtagttggagtagctgccgaacaaagtgaaggattacttgtgaaaattatgtacaatgcagtg |
16616884 |
T |
|
| Q |
316 |
actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgattttatatactattttcaactatttgcattgattattttgattttca |
415 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| |||||||||||||| ||||||||||| || |||| || |||||||||||| ||||||||||||| |
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| T |
16616883 |
tctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgttttgaattatttgcattgaccattttgattttca |
16616784 |
T |
|
| Q |
416 |
tctc |
419 |
Q |
| |
|
|||| |
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|
| T |
16616783 |
tctc |
16616780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 216 - 416
Target Start/End: Complemental strand, 16792621 - 16792422
Alignment:
| Q |
216 |
tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg |
315 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||||||| |||||||||| |||||||| |||| ||| |||| ||||||||||||||| |||| || |
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| T |
16792621 |
tgaggtggttatcgttgaaaaggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacattgcaatg |
16792523 |
T |
|
| Q |
316 |
actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgattttatatactattttcaactatttgcattgattattttgattttca |
415 |
Q |
| |
|
|||||||||| | ||| ||||||||||||| || ||||||||| |||| ||||||||||| | ||||||| |||| ||||||||||||||||||||| |
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| T |
16792522 |
actatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatattatgttttcaattattcacattgattattttgattttca |
16792423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 419
Target Start/End: Complemental strand, 16628732 - 16628480
Alignment:
| Q |
173 |
agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc |
266 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| |||||||| || |||| ||||||||| ||||||||||||| ||||||| | ||||| |||| |
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| T |
16628732 |
agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc |
16628633 |
T |
|
| Q |
267 |
caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagt |
366 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||| | |
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| T |
16628632 |
ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaat |
16628533 |
T |
|
| Q |
367 |
gattttatatactattttcaactatttgcattgattattttgattttcatctc |
419 |
Q |
| |
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| |||||||| || ||| || ||||||| ||||| ||||||||||| ||||| |
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|
| T |
16628532 |
gtttttatattctgtttggaattatttgcgttgatcattttgatttttatctc |
16628480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 419
Target Start/End: Complemental strand, 16637613 - 16637361
Alignment:
| Q |
173 |
agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc |
266 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| |||||||| || |||| ||||||||| ||||||||||||| ||||||| | ||||| |||| |
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|
| T |
16637613 |
agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc |
16637514 |
T |
|
| Q |
267 |
caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagt |
366 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||| | |
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|
| T |
16637513 |
ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaat |
16637414 |
T |
|
| Q |
367 |
gattttatatactattttcaactatttgcattgattattttgattttcatctc |
419 |
Q |
| |
|
| |||||||| || ||| || ||||||| ||||| ||||||||||| ||||| |
|
|
| T |
16637413 |
gtttttatattctgtttggaattatttgcgttgatcattttgatttttatctc |
16637361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 413
Target Start/End: Complemental strand, 16790709 - 16790512
Alignment:
| Q |
216 |
tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg |
315 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||| |||||||| |||||||||| |||||||| |||| ||| |||| |||||||||||||||||||| || |
|
|
| T |
16790709 |
tgaggtggttatcgttgaaagggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacaatgcaatg |
16790611 |
T |
|
| Q |
316 |
actatcaatcggaaccacgtatctcacttcacttatgat-aaaaaggtaagtgattttatatactattttcaactatttgcattgattattttgatttt |
413 |
Q |
| |
|
|||||||||| | ||| |||||||| ||||||| |||| ||||| |||| ||||||||||| | |||| ||||||| ||||||||||||||||||| |
|
|
| T |
16790610 |
actatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatattatcttttgaactattcacattgattattttgatttt |
16790512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 283 - 419
Target Start/End: Complemental strand, 38877446 - 38877310
Alignment:
| Q |
283 |
ggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgattttatatactatt |
382 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||| | ||| ||||||||||| || |||||||||||||| | || |||||||| || || |
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|
| T |
38877446 |
ggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatggttttatattctgtt |
38877347 |
T |
|
| Q |
383 |
ttcaactatttgcattgattattttgattttcatctc |
419 |
Q |
| |
|
|| ||||||| |||| |||||||||||||| ||||| |
|
|
| T |
38877346 |
ttgaactattcacattaattattttgatttttatctc |
38877310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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