View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_8 (Length: 416)
Name: NF10976_low_8
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 37158265 - 37157879
Alignment:
| Q |
17 |
aggtacatcctttgaaattatatttgattattattttgtagaagagaaagcataattcttgatgacataaagattacatttgacaaattattgttgggtg |
116 |
Q |
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| T |
37158265 |
aggtacatcctttgaaattatatttgattattattttgtagaagagaaagcataattcttgatgacataaagattacatttgacaaattattgttgggtg |
37158166 |
T |
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| Q |
117 |
ctttttgaacattaagtgcaatgtactaatggacaccatattttcttctcacaactttaattaatccagctttgtggaatttgagtacataatactcaac |
216 |
Q |
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| T |
37158165 |
ctttttgaacattaagtgcaatgtactaatggacaccatattttcttctcacaactttaattaatccagctttgtggaatttgagtacataatactcaac |
37158066 |
T |
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| Q |
217 |
cgtttgtannnnnnnnnnnnctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaataga |
316 |
Q |
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| T |
37158065 |
cgtttgtatttttcttttttctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaataga |
37157966 |
T |
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| Q |
317 |
aagaagcttacaaatattttattttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttc |
403 |
Q |
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| T |
37157965 |
aagaagcttacaaatattttattttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttc |
37157879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 7828937 - 7828858
Alignment:
| Q |
318 |
agaagcttacaaatattttattttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggtt |
402 |
Q |
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| T |
7828937 |
agaagcttacaaatactttattttaccattaca-----ttaataattacagcaatttattgttttatgttacagctttgttggtt |
7828858 |
T |
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