View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10976_low_9 (Length: 386)
Name: NF10976_low_9
Description: NF10976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10976_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 25898381 - 25898756
Alignment:
| Q |
11 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
110 |
Q |
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| T |
25898381 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
25898480 |
T |
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| Q |
111 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
210 |
Q |
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| T |
25898481 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
25898580 |
T |
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| Q |
211 |
agttaggaggatcctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
310 |
Q |
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| T |
25898581 |
agttaggaggatcctcaagatcaaagaccaaactatccccttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
25898680 |
T |
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| Q |
311 |
cggacccctatttaaagtgataagtttgccgtcatattttttggcggtattccaatcctgcaatgtaatgctctct |
386 |
Q |
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| T |
25898681 |
cggacccctatttaaagtgataagtttgcagtcatattttttggcggtattccaatcctgcaatgtaatgctctct |
25898756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 37422999 - 37423145
Alignment:
| Q |
192 |
acaatctcaacaaatagtgagttaggaggatcctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatctt |
291 |
Q |
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| T |
37422999 |
acaatctcaacaaataatgactccggagggtcttgcagttcgaagaacaacctatccctttgacgcaatttgttatc-ttcagaaatttgttccaatcct |
37423097 |
T |
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| Q |
292 |
cctctaaatatttttcattcggacccctatttaaagtgataagtttgc |
339 |
Q |
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| T |
37423098 |
ctcctagatatttttcatttggacccctgtttgaagtggtaagtttgc |
37423145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 46006486 - 46006442
Alignment:
| Q |
11 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
55 |
Q |
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| T |
46006486 |
cataggaacaatattaaagcacataaattataggaacataggaat |
46006442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 12866236 - 12866192
Alignment:
| Q |
11 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
55 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
12866236 |
cataggaacaatattaaagcacataaattataggaacataggaat |
12866192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 12834258 - 12834214
Alignment:
| Q |
11 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
55 |
Q |
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||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
12834258 |
cataggaacaatattaaagcacataaattataggaacgtaggaat |
12834214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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